Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq33589 98.7 1e-18 seq59117 86.0 9e-15 seq13312 78.8 1e-12 >seq33589 Length=127 Score = 98.7 bits (108), Expect = 1e-18 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 71 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 72 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 105 >seq59117 Length=9635 Score = 86.0 bits (94), Expect = 9e-15 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||| ||||||| ||||| || ||||||||| |||| ||| || | |||||||||| Sbjct 1919 CACTGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCTGTGTTTT 1861 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCT 100 ||||||||||||||| ||||||||||| Sbjct 1860 TAGTAAACAGTCGCTACCCTCTATTCT 1834 >seq13312 Length=127 Score = 78.8 bits (86), Expect = 1e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| || | |||||||||||||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCTGTGTTTTTAGTAAACAGTC 68 Query 86 GCTTCCCTCTATTCT 100 ||||||||||||||| Sbjct 67 GCTTCCCTCTATTCT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693993083770