Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq59117 158 3e-36 seq33589 102 2e-19 seq5444 96.9 7e-18 seq33939 80.6 6e-13 seq13312 75.2 2e-11 >seq59117 Length=9635 Score = 158 bits (174), Expect = 3e-36 Identities = 147/184 (80%), Gaps = 7/184 (4%) Strand=Plus/Minus Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 150 ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 2022 TACCCGACAAGGAATGTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAG 1963 Query 151 GCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAG 210 ||| |||| || ||| |||| || |||| || || ||||| |||||| Sbjct 1962 ATTTATATTCATGGC----ATT--TCTACCA-ATCCTTTTTGTTTTTAAGCACTGGGCAG 1910 Query 211 GCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGT 270 | ||||| |||||||||||| || | ||||||| || ||||||||||| ||||||||| Sbjct 1909 GTGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTGTGTTTTTAGTAAACAGT 1850 Query 271 CGCT 274 |||| Sbjct 1849 CGCT 1846 >seq33589 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | |||||||||| |||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTG 72 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 73 TGTTTTTAGTAAACAGTCGCT 93 >seq5444 Length=183 Score = 96.9 bits (106), Expect = 7e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 150 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 79 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAG 20 Query 151 GCTTAAGTTCA 161 ||| |||| Sbjct 19 ATTTATATTCA 9 >seq33939 Length=114 Score = 80.6 bits (88), Expect = 6e-13 Identities = 92/121 (76%), Gaps = 7/121 (6%) Strand=Plus/Minus Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGA 183 |||| ||||| |||||||||||||| | ||| |||| || ||| |||| || | Sbjct 114 TTATGGTTACAGCCGCCGTTTACTGAGATTTATATTCATGGC----ATT--TCTACCA-A 62 Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243 ||| || ||| |||||||||||||| ||||| |||||||||||| || | |||||| Sbjct 61 TCCTTTTTGTCTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAG 2 Query 244 C 244 | Sbjct 1 C 1 >seq13312 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 213 GTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 ||||| |||||||||||| || | ||||||| || ||||||||||| ||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTGTGTTTTTAGTAAACAGTCG 67 Query 273 CTTGGGCCTATTCT 286 ||| ||||||| Sbjct 66 CTTCCCTCTATTCT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061757354240