Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq58743 360 3e-97 seq53637 230 4e-58 seq34145 152 9e-35 seq29556 143 5e-32 seq19773 98.7 2e-18 >seq58743 Length=2429 Score = 360 bits (398), Expect = 3e-97 Identities = 243/275 (88%), Gaps = 13/275 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 916 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 975 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 976 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCTGAC 1035 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1036 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1095 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGACTAA 258 |||||||||||||||| |||||||||| |||||| ||| | |||| Sbjct 1096 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAA 1155 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| |||||| |||||||||| Sbjct 1156 AGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1190 >seq53637 Length=6088 Score = 230 bits (254), Expect = 4e-58 Identities = 141/149 (95%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1862 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC-TAT 1920 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 1921 TAGTGGGTGAACAATCCAACGTTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 1980 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||||||||||| |||||||||| Sbjct 1981 ATCGAAGGATCAAAAAGCGACGTCGCTAT 2009 >seq34145 Length=94 Score = 152 bits (168), Expect = 9e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 94 CGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGC 35 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||| ||||||||||||||||||| Sbjct 34 TATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1 >seq29556 Length=92 Score = 143 bits (158), Expect = 5e-32 Identities = 87/92 (95%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1 TCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAG 60 Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 ||||||||||||||||||||||||| |||||| Sbjct 61 AGCCGACATCGAAGGATCAAAAAGCGACGTCG 92 >seq19773 Length=64 Score = 98.7 bits (108), Expect = 2e-18 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 57 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853883173440