Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq59117 116 1e-23 seq37432 93.3 1e-16 seq25207 86.0 2e-14 seq36894 75.2 3e-11 >seq59117 Length=9635 Score = 116 bits (128), Expect = 1e-23 Identities = 183/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | |||| | | |||| ||||||| |||| | |||||| Sbjct 5234 GATTAGGTAGTTGTTGTAGTAATTATTCAACAAGCCGACGATGCTTAGCTGGTTTGAGAG 5293 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || ||| | ||||||||||| Sbjct 5294 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGCAGTGG 5351 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT--GAAGGC 343 ||||||| ||||||||| ||||| |||| || || | |||| | ||| |||||| Sbjct 5352 AGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGGGTGATCAGAAGGC 5411 Query 344 CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAG 400 | | ||||| ||| | || ||||||| |||||| | |||||||| | |||| Sbjct 5412 TTAATTGCTGTAAAACTCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAG 5471 Query 401 CCCCGGCTAACTACG 415 ||| | |||||| || Sbjct 5472 CCCTGACTAACTTCG 5486 >seq37432 Length=87 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||| | Sbjct 87 TAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-G 29 Query 468 GGCGTAAAGGGTGCGTAGGTGGTTTCTT 495 || ||||||||||||||||||| || || Sbjct 28 GGTGTAAAGGGTGCGTAGGTGGCTTGTT 1 >seq25207 Length=81 Score = 86.0 bits (94), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||| | Sbjct 81 TAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-G 23 Query 468 GGCGTAAAGGGTGCGTAGGTGG 489 || | ||||||||||||||||| Sbjct 22 GGTGCAAAGGGTGCGTAGGTGG 1 >seq36894 Length=73 Score = 75.2 bits (82), Expect = 3e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||||| | |||||| ||||||||||| |||||||||||| || |||| || ||||| || Sbjct 73 AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCG 14 Query 458 GAATTACTGGG 468 | | |||||| Sbjct 13 CATTGACTGGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496694101760