Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq59117 98.7 2e-18 seq37432 98.7 2e-18 seq25207 93.3 1e-16 seq36894 75.2 3e-11 >seq59117 Length=9635 Score = 98.7 bits (108), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT-GGCGAAGGCGGCTTGCT 255 |||||| |||||||| | |||||| |||| || | ||||||||| ||| || Sbjct 5639 AGTGTAAAGGTGAAATTTTTCGATATTTAAAGGACATGCAATAGGCGAAGGCTGCTATCT 5698 Query 256 GGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 313 | | ||| ||||||||||||| | ||||| | |||| |||||||||||||| ||||| Sbjct 5699 --ATTTTAATACTGACACTGAGGCACAAAAGCATAGGGATCAAACAGGATTAGAGACCCT 5756 Query 314 GGTAGTCCACGCCGTAAACGATGAATA 340 ||||||| | ||| | | ||||||||| Sbjct 5757 GGTAGTCTATGCCCTGACCGATGAATA 5783 >seq37432 Length=87 Score = 98.7 bits (108), Expect = 2e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 23 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 82 ||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||||| Sbjct 87 TAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGG 28 Query 83 GCGTAAAGGGTGCGTAGGTGGTTTCTT 109 | ||||||||||||||||||| || || Sbjct 27 GTGTAAAGGGTGCGTAGGTGGCTTGTT 1 >seq25207 Length=81 Score = 93.3 bits (102), Expect = 1e-16 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 23 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 82 ||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||||| Sbjct 81 TAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGG 22 Query 83 GCGTAAAGGGTGCGTAGGTGG 103 | | ||||||||||||||||| Sbjct 21 GTGCAAAGGGTGCGTAGGTGG 1 >seq36894 Length=73 Score = 75.2 bits (82), Expect = 3e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||||| | |||||| ||||||||||| |||||||||||| || |||| || ||||| || Sbjct 73 AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCG 14 Query 73 GAATTACTGGG 83 | | |||||| Sbjct 13 CATTGACTGGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202472184320