Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq58397 172 1e-40 seq60037 114 2e-23 >seq58397 Length=2976 Score = 172 bits (190), Expect = 1e-40 Identities = 121/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 914 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 855 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 854 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 795 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 794 ACGTCCCTGCCCTTTGTA 777 Score = 140 bits (154), Expect = 6e-31 Identities = 102/116 (88%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||||||||||||||||||||||||| Sbjct 1094 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 1035 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1034 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATCCAACGAGT 979 >seq60037 Length=20208 Score = 114 bits (126), Expect = 2e-23 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||| ||||||||||||||||||||| Sbjct 17758 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAATTTTGAGGCAATAACAGGTCTG 17699 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 |||||||||||||||||||||||||||||||||||| Sbjct 17698 GGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 17662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946627038720