Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq58397 482 7e-134 seq58916 105 2e-20 >seq58397 Length=2976 Score = 482 bits (534), Expect = 7e-134 Identities = 450/574 (78%), Gaps = 71/574 (12%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 2290 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 2349 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 2350 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 2409 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 2410 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 2469 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 2470 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGC 2529 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---- 283 | ||||| ||||||| || | ||||| ||||||||||| ||||| Sbjct 2530 CCCCACAAGGAGGGCATGAATGCGATCCGAAAGAGTTACTATGAATCACC-AGGAGTTGA 2588 Query 284 CCCCGAAG--GGC-GTTGGTTTTTTATCTAATAAATACACCCCT-------TCCGAAG-- 331 ||| | ||| | |||||||| | |||||||||||| |||| | ||| | Sbjct 2589 AGCCGTTGCCGGCTGCTGGTTTTTAACCTAATAAATACATCCCTCTGCGCATGCGAGGAC 2648 Query 332 ---------------------------TCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||| || ||||||||||||||||||||| Sbjct 2649 GAGGCCGTGAAGCCCCGCCCCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAGAATT 2708 Query 365 ACCACGGTTATCCATGTAG-------------TAAGGTACTATCAAATAAACGATAACTG 411 |||||||||||||| |||| ||| || ||||||||||| ||||||| Sbjct 2709 ACCACGGTTATCCAAGTAGGTAAAAAAAGACAAAAGAGACCATCAAATAAACTATAACTG 2768 Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGC 470 |||||||||||||| |||||| || | ||||| | ||||||||||||||||||||||| Sbjct 2769 ATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGCATGGC 2828 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| Sbjct 2829 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 2862 >seq58916 Length=9955 Score = 105 bits (116), Expect = 2e-20 Identities = 97/121 (80%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 367 CACGGTTATCCATGTAGT---AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCC 423 || ||||||||| |||| ||| || ||| |||||| ||||||||||||||||||| Sbjct 6901 CAGGGTTATCCAAGTAGGTACAAGAGACCATCTCATAAACTATAACTGATTTAATGAGCC 6842 Query 424 ATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAG 482 || | ||| | ||||| | | ||||||||| ||||||||||||||||||||||||| Sbjct 6841 ATCTGGAGTGTTGCTGTAAAAACAAGCTTATACTGAGACATGCATGGCTTAATCTTTGAG 6782 Query 483 A 483 | Sbjct 6781 A 6781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509486359040