Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq44820 86.0 3e-15 seq31208 80.6 1e-13 >seq44820 Length=2078 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1054 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 1113 Query 111 TCTTCGA 117 ||||||| Sbjct 1114 TCTTCGA 1120 >seq31208 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||| ||| ||||| ||||||||||||||||||||||||||| Sbjct 86 AACGTCTCCTAATCGCTGGTCGACATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 27 Query 111 TCTTCGA 117 ||||||| Sbjct 26 TCTTCGA 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278235998040