Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq44820 232 1e-58 seq39968 224 2e-56 seq54043 91.5 3e-16 >seq44820 Length=2078 Score = 232 bits (256), Expect = 1e-58 Identities = 218/276 (79%), Gaps = 24/276 (9%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-------TTTGCT--- 115 |||| | ||||| |||||||||||||||||||||||||||| ||| || Sbjct 1396 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATTCAATTTTCTGCC 1337 Query 116 --CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTT 170 ||||||||||||||||| ||||| ||||||||| || | ||||||| ||||||| Sbjct 1336 ACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTT 1277 Query 171 T--------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAA 222 | | ||||| ||||||||||||||||||||| ||||| | | |||| || Sbjct 1276 TTGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAA 1217 Query 223 TTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAA 282 |||||||||||||||||||||||||||| |||| ||||| |||||||||| | |||| Sbjct 1216 TTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAA 1157 Query 283 GGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||| |||||||||||||||| Sbjct 1156 GGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 1122 >seq39968 Length=1275 Score = 224 bits (248), Expect = 2e-56 Identities = 214/272 (79%), Gaps = 24/272 (9%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-------TTTGCT--- 115 |||| | ||||| |||||||||||||||||||||||||||| ||| || Sbjct 271 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATTCAATTTTCTGCC 212 Query 116 --CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTTGGTT 170 ||||||||||||||||| ||||| ||||||||| || | ||||||| ||||||| Sbjct 211 ACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTT 152 Query 171 T--------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAA 222 | | ||||| ||||||||||||||||||||| ||||| | | |||| || Sbjct 151 TTGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAA 92 Query 223 TTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAA 282 |||||||||||||||||||||||||||| |||| ||||| |||||||||| | |||| Sbjct 91 TTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAA 32 Query 283 GGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 |||||||||||||||||| |||||||||||| Sbjct 31 GGATGTTTTCATTAATCA-AGAACGAAAGTTA 1 >seq54043 Length=2785 Score = 91.5 bits (100), Expect = 3e-16 Identities = 74/88 (84%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 234 GAAATTCTTGGATTTATTGA---AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTT 290 ||||||||||||||| | | ||| ||||| |||||||||| | |||||||||||| Sbjct 1821 GAAATTCTTGGATTTTTAAAGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTT 1880 Query 291 TCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||| |||||||||||||||| Sbjct 1881 TCATTAATCA-AGAACGAAAGTTAGGGG 1907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914624924928