Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq62566 176 2e-41 seq6317 129 2e-27 seq59660 104 1e-19 >seq62566 Length=5832 Score = 176 bits (194), Expect = 2e-41 Identities = 240/338 (71%), Gaps = 38/338 (11%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 4655 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 4596 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG------------TGAAC 489 | |||||||| ||||| |||||| | ||||| | |||||| | | | Sbjct 4595 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGGCGGCATTAGC 4536 Query 490 GG-------AGGTGGGAA----------CCCGTGAGGGTGC------ACCATCGACCGAT 526 || ||||||||| | | || | |||| |||| || |||| Sbjct 4535 GGTCGCCTGAGGTGGGAAGGGGTATGCGCGCATGCGTGTGCTCCTGCACCACCGGCCGAC 4476 Query 527 CCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 | ||| | ||| || || |||||| ||||| || |||||||||||||||||| ||| Sbjct 4475 CTGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTG 4418 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| Sbjct 4417 AACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTG 4358 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || || | ||| ||||||||||| Sbjct 4357 ACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 4320 >seq6317 Length=138 Score = 129 bits (142), Expect = 2e-27 Identities = 113/139 (81%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTG---GC 105 |||||||||||||||| |||| ||| ||||||| | | || ||||||||||| || Sbjct 138 TGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAATATTGTCAGC 79 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 |||||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||| Sbjct 78 GAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAG 19 Query 166 TTAAAAAGCACGTGAAATT 184 | ||||| | ||||||| Sbjct 18 -TCAAAAGTGCTTGAAATT 1 >seq59660 Length=6842 Score = 104 bits (114), Expect = 1e-19 Identities = 96/120 (80%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||||||||||||||||||| || | |||| ||||||| | | || ||||||| Sbjct 5560 GAGTC-AGTTGTTTGGGAATGCAGCCCTTAGTGGGTGGTAAATCCCACCCAAGGCTAAAT 5502 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| | |||||| |||||| ||||||| |||| ||||||||||||| |||||| Sbjct 5501 ATTGTCAGTGAGAGACTGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 5442 Score = 102 bits (112), Expect = 3e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || |||||| |||||||| |||||||||| ||||||| |||||||||| ||| Sbjct 6207 GAAGGGTTTGAGCCAGAGCATATTTGTTGGGACCTGAAAGATTGTGAACTATGGGTGACC 6266 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||| |||||||||||||||||||||||||| Sbjct 6267 AGGACGAAGCCAGAGGAAACTCTGGTGGAGG 6297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078652167800