Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq15208 93.3 1e-16 seq15207 89.7 1e-15 seq19315 82.4 2e-13 seq2949 82.4 2e-13 seq35366 78.8 2e-12 seq24303 78.8 2e-12 >seq15208 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 5 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 64 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 65 GAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 116 >seq15207 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | | Sbjct 5 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGG 64 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 65 GAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 116 >seq19315 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 237 CAAT-GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| ||||||||| || || ||| |||||| || | |||| ||||| | |||| Sbjct 18 CAATAGGCGAAGGCTGCTATCTATTTTAATACTGACACTGAGGCACAAAAGCATAGGGAT 77 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||| |||||||||||| | ||||| | |||| Sbjct 78 CAAACAGGATTAGAGACCCTGGTAGTCTATGCCCTGACCGAT 119 >seq2949 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| ||||||||||| |||||||||||| || | | || |||| ||| | | |||| Sbjct 2 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGTGAGTGTTATTCGCATTGACTG 61 Query 84 GGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 ||||||||| ||||| ||| || |||| |||| Sbjct 62 GGCGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 92 >seq35366 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 262 TAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT 321 ||| |||||| || | |||||||||| | |||| |||||||||||||| |||||||||| Sbjct 113 TAATACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGGCCCTGGTAGT 54 Query 322 CCACGCCCTAAACGAT 337 | | ||||| | |||| Sbjct 53 CTATGCCCTGACCGAT 38 >seq24303 Length=101 Score = 78.8 bits (86), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| ||||||||||| |||||||||||| || | | || |||| ||| | | |||| Sbjct 100 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGTGAGTGTTATTCGCATTGACTG 41 Query 84 GGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||||| ||||| ||| || |||| |||| Sbjct 40 GGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288789666944