Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq35044 131 2e-28 seq8681 95.1 2e-17 >seq35044 Length=244 Score = 131 bits (144), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 13/208 (6%) Strand=Plus/Minus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||||||||||| ||||| || ||||||||| || | ||| ||| | |||||||||| Sbjct 243 CACCGGGCAGGTGTCAGACCCTATACATCGTTTTGCAA-CTTAGCAGAGTCCTGTGTTTT 185 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 ||||||||||||||| ||||||||||| | |||| |||| | || || | Sbjct 184 TAGTAAACAGTCGCTACCCTCTATTCTGT------TACACCTACTCACAATTTC--TCGC 133 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193 || || |||||||||||||||||||||| | ||||||||||| |||||| | | Sbjct 132 ---GAGAGGTACCCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTCAACGTT 76 Query 194 GTTCACCCGAACGCCTTAGTATTCTCTA 221 |||| ||| | | ||||| ||| ||||| Sbjct 75 GTTCTCCC-ATCACCTTAATATACTCTA 49 >seq8681 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| || | ||| Sbjct 115 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCT 57 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 56 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693977302228