Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq35044 75.2 1e-11 seq8681 73.4 4e-11 >seq35044 Length=244 Score = 75.2 bits (82), Expect = 1e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || ||||||||| ||| Sbjct 171 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGCAAAACGATGTATAGGGTCTGA 230 Query 128 CGCCTGCCCGGTGC 141 | |||||||||||| Sbjct 231 CACCTGCCCGGTGC 244 >seq8681 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||| || || | || || ||||||||| ||| Sbjct 36 GCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGA 95 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 96 CACCTGCCCGGTGCTGAAAG 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476509760516