Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq26640 165 2e-38 seq27842 93.3 1e-16 seq27289 91.5 4e-16 seq38639 87.8 5e-15 seq35222 87.8 5e-15 seq35044 77.0 8e-12 seq31773 73.4 1e-10 seq8681 73.4 1e-10 >seq26640 Length=163 Score = 165 bits (182), Expect = 2e-38 Identities = 124/146 (85%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||||||||||||||| | || |||||||||| | | | ||||||||| | Sbjct 154 TATACTGCATCTTCACAGCAAATTTAATTTCACTGGGCCAACGCTGGAGACAGTAGGGAA 95 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 94 GTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGA 35 Query 127 CCGTTATTGTTACGGCCGCCGTTTAC 152 ||||||| ||||| |||||||||||| Sbjct 34 CCGTTATGGTTACAGCCGCCGTTTAC 9 >seq27842 Length=82 Score = 93.3 bits (102), Expect = 1e-16 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 97 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 19 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTAC 74 >seq27289 Length=79 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 98 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 79 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTAC 25 >seq38639 Length=92 Score = 87.8 bits (96), Expect = 5e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 97 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 13 TACCCGACAAGGAATTGCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTAC 68 >seq35222 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 97 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| Sbjct 109 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGTCGCCGTTTAC 54 >seq35044 Length=244 Score = 77.0 bits (84), Expect = 8e-12 Identities = 145/212 (68%), Gaps = 16/212 (8%) Strand=Plus/Minus Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTT 265 |||||||||||| |||| ||||||||| || || | || ||||||| ||||||||| Sbjct 244 GCACCGGGCAGGTGTCAGACCCTATACATCGTTTTGCAACTTAGCAGAGTCCTGTGTTTT 185 Query 266 TAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCT 325 || ||||||||||| | || | | || ||| ||| | ||| | || Sbjct 184 TAGTAAACAGTCGCTACCCTCTATTCTGTTACACC----------TACTCA-CAATTTCT 136 Query 326 TCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCC 385 | | || | ||||||||||||||||||| | | ||||||| ||||||||| Sbjct 135 ----CGCGAGAGGTACCCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTCAA 80 Query 386 CCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 | |||||| | | | |||| ||| ||||| Sbjct 79 CGTTGTTCTC-CCATCACCTTAATATACTCTA 49 >seq31773 Length=143 Score = 73.4 bits (80), Expect = 1e-10 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 97 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTAC 139 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 99 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTAC 141 >seq8681 Length=127 Score = 73.4 bits (80), Expect = 1e-10 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||| | |||||||||||| |||| ||||||||| || || | || || |||| ||| Sbjct 115 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 56 Query 260 TGTTTTTAATAAACAGTCGC 279 |||||||| ||||||||||| Sbjct 55 TGTTTTTAGTAAACAGTCGC 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260007763712