Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq35044 140 7e-31 seq26640 140 7e-31 seq27842 96.9 7e-18 seq8681 96.9 7e-18 seq27289 95.1 3e-17 seq38639 93.3 9e-17 seq35222 93.3 9e-17 seq23305 91.5 3e-16 seq14852 91.5 3e-16 seq35474 89.7 1e-15 seq34408 89.7 1e-15 seq38650 73.4 8e-11 seq31773 73.4 8e-11 seq3399 73.4 8e-11 >seq35044 Length=244 Score = 140 bits (154), Expect = 7e-31 Identities = 136/175 (78%), Gaps = 10/175 (6%) Strand=Plus/Minus Query 200 GCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTT 259 |||||||||||| ||||| |||||||||||| |||| |||||||||| |||||||||| Sbjct 244 GCACCGGGCAGGTGTCAGACCCTATACATCGTTTTGCAACTTAGCAGAGTCCTGTGTTTT 185 Query 260 TGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCATA---------GACAGGCA 309 | ||||||||||||| ||||||| | ||| ||| | || ||| | Sbjct 184 TAGTAAACAGTCGCTACCCTCTATTCTGTTACACCTACTCACAATTTCTCGCGAGAGGTA 125 Query 310 CCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||| ||||||||| |||||||||||||||||||| | | |||||| Sbjct 124 CCCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTCAACGTTGTTCTC 70 >seq26640 Length=163 Score = 140 bits (154), Expect = 7e-31 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||| | | | | | |||||||| || ||||| Sbjct 148 GCATCTTCACAGCAAATTTAATTTCACTGGGCCAACGCTGGAGACAGTAGGGAAGTCGTT 89 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 88 ACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 29 Query 127 TAGTTACGGCCGCCGTTTACTG 148 | ||||| |||||||||||||| Sbjct 28 TGGTTACAGCCGCCGTTTACTG 7 >seq27842 Length=82 Score = 96.9 bits (106), Expect = 7e-18 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTG 148 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 19 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 76 >seq8681 Length=127 Score = 96.9 bits (106), Expect = 7e-18 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | ||||||| || |||| Sbjct 115 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 56 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 55 TGTTTTTAGTAAACAGTCGCT 35 >seq27289 Length=79 Score = 95.1 bits (104), Expect = 3e-17 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 92 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 151 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 79 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAGA 20 Query 152 CTTAAGTTCA 161 ||| |||| Sbjct 19 TTTATATTCA 10 >seq38639 Length=92 Score = 93.3 bits (102), Expect = 9e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 150 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| | Sbjct 13 TACCCGACAAGGAATTGCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTGAG 72 Query 151 GCTTAAGTTCA 161 ||| |||| Sbjct 73 ATTTATATTCA 83 >seq35222 Length=127 Score = 93.3 bits (102), Expect = 9e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 150 ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| | Sbjct 109 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGTCGCCGTTTACTGAG 50 Query 151 GCTTAAGTTCA 161 ||| |||| Sbjct 49 ATTTATATTCA 39 >seq23305 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 101/134 (75%), Gaps = 7/134 (5%) Strand=Plus/Plus Query 135 GCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACC 194 |||||||||||||| | ||| |||| || ||| || || |||| || | Sbjct 1 GCCGCCGTTTACTGAGATTTATATTCATGGC----ATTCCT---ACCAATCCTTTTTGTC 53 Query 195 TTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGT 254 || ||||||| |||||| ||||| |||||||||||| || | |||||||||| ||||| Sbjct 54 TTTCAGCACCAGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGT 113 Query 255 GTTTTTGGTAAACA 268 |||||| ||||||| Sbjct 114 GTTTTTAGTAAACA 127 >seq14852 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 101/134 (75%), Gaps = 7/134 (5%) Strand=Plus/Plus Query 136 CCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCT 195 ||||||||||||| | ||| |||| || ||| || || |||| || || Sbjct 1 CCGCCGTTTACTGAGATTTATATTCATGGC----ATTCCT---ACCAATCCTTTTTGTCT 53 Query 196 TCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTG 255 | |||||||| ||||| ||||| |||||||||||| || | |||||||||| |||||| Sbjct 54 TTCAGCACCGAGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGTG 113 Query 256 TTTTTGGTAAACAG 269 ||||| |||||||| Sbjct 114 TTTTTAGTAAACAG 127 >seq35474 Length=86 Score = 89.7 bits (98), Expect = 1e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | |||||||||| |||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTG 72 Query 254 TGTTTTTGGTAAAC 267 ||||||| |||||| Sbjct 73 TGTTTTTAGTAAAC 86 >seq34408 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 100/133 (75%), Gaps = 7/133 (5%) Strand=Plus/Plus Query 135 GCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACC 194 |||||||||||||| | ||| |||| || ||| || || |||| || | Sbjct 2 GCCGCCGTTTACTGAGATTTATATTCATGGC----ATTCCT---ACCAATCCTTTTTGTC 54 Query 195 TTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGT 254 || |||||| ||||||| ||||| |||||||||||| || | |||||||||| ||||| Sbjct 55 TTTCAGCACTGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGT 114 Query 255 GTTTTTGGTAAAC 267 |||||| |||||| Sbjct 115 GTTTTTAGTAAAC 127 >seq38650 Length=64 Score = 73.4 bits (80), Expect = 8e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 ||||||| ||||| |||||||||||| || | |||||||||| ||||||||||| ||| Sbjct 64 GGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGTGTTTTTAGTA 5 Query 265 AAC 267 ||| Sbjct 4 AAC 2 >seq31773 Length=143 Score = 73.4 bits (80), Expect = 8e-11 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 91 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTAC 133 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 99 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTAC 141 >seq3399 Length=64 Score = 73.4 bits (80), Expect = 8e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 ||||||| ||||| |||||||||||| || | |||||||||| ||||||||||| ||| Sbjct 2 GGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTGTGTTTTTAGTA 61 Query 265 AAC 267 ||| Sbjct 62 AAC 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061732430336