Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq62566 363 3e-98 seq46633 136 7e-30 seq51562 132 8e-29 seq21359 113 8e-23 seq11825 109 9e-22 seq59908 93.3 7e-17 >seq62566 Length=5832 Score = 363 bits (402), Expect = 3e-98 Identities = 244/275 (89%), Gaps = 13/275 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1706 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 1765 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1766 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 1825 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1826 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1885 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGACTAA 258 |||||||||||||||| |||||||||| |||||| ||| | |||| Sbjct 1886 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAA 1945 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| |||||| |||||||||| Sbjct 1946 AGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1980 >seq46633 Length=11788 Score = 136 bits (150), Expect = 7e-30 Identities = 101/119 (85%), Gaps = 8/119 (7%) Strand=Plus/Minus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 |||||||||||||| |||| |||||||||||| || |||||||||||||| ||||| || Sbjct 8817 GGTGAACAATCCAATGCTTGGCGAATTCTGCTTTGGAATGATAGGAAGAGCTGACATTGA 8758 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||||| || ||||||| |||| |||||||||||||||||||||||||| Sbjct 8757 AGGATCAAA--------TCACTATGAATGCTTAGCTGCCACAAGCCAGTTATCCCTGTG 8707 >seq51562 Length=7708 Score = 132 bits (146), Expect = 8e-29 Identities = 96/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||| |||||| ||||||||||||| | |||||||||||||| |||||| |||||||||| Sbjct 4888 TCCCACGCTTGGCGAATTCTGCTTCAGAATGATAGGAAGAGCTGACATCAAAGGATCAAA 4829 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||| || || | |||||| |||||| ||||||||||||||||||||||| Sbjct 4828 AAGTGACATCACAATGAACACTTGGCCACCACAAGCCAGTTATCCCTGTGG 4778 >seq21359 Length=67 Score = 113 bits (124), Expect = 8e-23 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 GGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 60 Query 100 GAACAAT 106 ||| ||| Sbjct 61 GAAAAAT 67 >seq11825 Length=64 Score = 109 bits (120), Expect = 9e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2 GGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 61 Query 100 GAA 102 ||| Sbjct 62 GAA 64 >seq59908 Length=5981 Score = 93.3 bits (102), Expect = 7e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 || ||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| Sbjct 5803 AATGATCAAAAAGCAACGTCACTATGAACACTTGGCCGCCACAAGCCAGTTATCCCTGTG 5862 Query 216 G 216 | Sbjct 5863 G 5863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853863129216