Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq15208 91.5 2e-16 seq15207 87.8 3e-15 seq24303 80.6 4e-13 seq2949 77.0 5e-12 >seq15208 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 107 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 48 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 47 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 5 >seq15207 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || || || ||||||||| Sbjct 107 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCCCCCTCTCCGTATTACC 48 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 47 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 5 >seq24303 Length=101 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || || || ||||||||| Sbjct 19 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCACCCTCTCCGTATTACC 78 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 79 GCGACTGCTGGCACGAAGTTAG 100 >seq2949 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||| |||| | ||| || ||||| || || || ||||||||| Sbjct 83 CCACCTACGCACCCTTTACGCCCAGTCAATGCGAATAACACTCACCCTCTCCGTATTACC 24 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 23 GCGACTGCTGGCACGAAGTTAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828295489756