Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq34255 118 2e-24 seq22547 86.0 1e-14 seq13796 86.0 1e-14 seq9762 82.4 1e-13 seq12611 80.6 4e-13 seq27265 78.8 1e-12 seq22531 78.8 1e-12 seq357 78.8 1e-12 seq7863 73.4 6e-11 >seq34255 Length=230 Score = 118 bits (130), Expect = 2e-24 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230 ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| || Sbjct 230 AACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAA 171 Query 231 CCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 170 CCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATCG 126 >seq22547 Length=68 Score = 86.0 bits (94), Expect = 1e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| |||||||||| Sbjct 2 ACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGC 61 Query 227 CCAACCC 233 | ||||| Sbjct 62 CTAACCC 68 >seq13796 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| ||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 55 GACAGATAGAAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 114 Query 216 GGGCGAACAGCC 227 ||||||||||| Sbjct 115 AGGCGAACAGCC 126 >seq9762 Length=70 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 164 GGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223 || ||| ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||| Sbjct 1 GGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAAC 60 Query 224 AGCCCAACCC 233 |||| ||||| Sbjct 61 AGCCTAACCC 70 >seq12611 Length=67 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 157 ACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATG 216 || |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 1 ACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATA 60 Query 217 GGCGAAC 223 ||||||| Sbjct 61 GGCGAAC 67 >seq27265 Length=64 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230 ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| || Sbjct 1 AACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAA 60 Query 231 CCC 233 ||| Sbjct 61 CCC 63 >seq22531 Length=64 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| |||| Sbjct 64 ATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCG 5 Query 221 AAC 223 ||| Sbjct 4 AAC 2 >seq357 Length=65 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| |||| Sbjct 3 ATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCG 62 Query 221 AAC 223 ||| Sbjct 63 AAC 65 >seq7863 Length=127 Score = 73.4 bits (80), Expect = 6e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 157 ACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATG 216 || |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 65 ACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATA 124 Query 217 GGC 219 ||| Sbjct 125 GGC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780324708496