Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq15208 118 3e-24 seq15207 114 4e-23 seq2949 102 2e-19 seq24303 96.9 1e-17 seq215 75.2 3e-11 >seq15208 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 96/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || ||| Sbjct 4 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGG 63 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | || ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 64 CGAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 117 >seq15207 Length=127 Score = 114 bits (126), Expect = 4e-23 Identities = 95/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || ||| Sbjct 4 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGG 63 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 64 GGAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 117 >seq2949 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| ||||||||||| |||||||||||| || ||| || ||||| || | | ||| Sbjct 2 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGTGAGTGTTATTCGCATTGACT- 60 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||||||||||||||||||||||| || |||||| Sbjct 61 GGGCGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 93 >seq24303 Length=101 Score = 96.9 bits (106), Expect = 1e-17 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| ||||||||||| |||||||||||| || ||| || ||||| || | | ||| Sbjct 100 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGTGAGTGTTATTCGCATTGACT- 42 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| ||||||||||||||||||| || |||||| Sbjct 41 GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 9 >seq215 Length=89 Score = 75.2 bits (82), Expect = 3e-11 Identities = 67/83 (81%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 364 TCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG 421 || ||||||| |||||| | |||||||| | ||||||| | |||||| |||||||| Sbjct 83 TCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAG 24 Query 422 CAGCCGCGGTAATACGTAGGGGG 444 ||| |||||||||||| || ||| Sbjct 23 CAGTCGCGGTAATACGGAGAGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496658968064