Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq15208 123 6e-26 seq15207 118 3e-24 seq2949 107 5e-21 seq24303 104 6e-20 seq19315 93.3 1e-16 seq35366 89.7 1e-15 >seq15208 Length=127 Score = 123 bits (136), Expect = 6e-26 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 5 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 64 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 65 GAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 117 >seq15207 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || ||| Sbjct 5 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGG 64 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 65 GAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 117 >seq2949 Length=127 Score = 107 bits (118), Expect = 5e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81 |||||| ||||||||||| |||||||||||| || ||| || ||||| || | | |||| Sbjct 2 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGTGAGTGTTATTCGCATTGACTG 61 Query 82 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 |||||||||||||||||||||| || |||||| Sbjct 62 GGCGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 93 >seq24303 Length=101 Score = 104 bits (114), Expect = 6e-20 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81 |||||| ||||||||||| |||||||||||| || ||| || ||||| || | | |||| Sbjct 100 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGTGAGTGTTATTCGCATTGACTG 41 Query 82 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||||||||||||||||| || |||||| Sbjct 40 GGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 9 >seq19315 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/104 (81%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 239 GGCGAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| ||| || | | ||| ||||||||||||| | ||||| | |||| ||| Sbjct 23 GGCGAAGGCTGCTATCT--ATTTTAATACTGACACTGAGGCACAAAAGCATAGGGATCAA 80 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 ||||||||||| |||||||||||| | ||| | | ||||||||| Sbjct 81 ACAGGATTAGAGACCCTGGTAGTCTATGCCCTGACCGATGAATA 124 >seq35366 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| ||||||| | |||| |||||||||||||| ||||||||||| | Sbjct 109 ACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGGCCCTGGTAGTCTAT 50 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 49 GCCCTGACCGATGAATA 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202443957248