Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq44820 172 1e-40 seq61025 77.0 6e-12 >seq44820 Length=2078 Score = 172 bits (190), Expect = 1e-40 Identities = 121/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 360 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 301 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 300 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 241 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 240 ACGTCCCTGCCCTTTGTA 223 Score = 140 bits (154), Expect = 6e-31 Identities = 102/116 (88%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||||||||||||||||||||||||| Sbjct 544 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 485 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 484 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATCCAACGAGT 429 >seq61025 Length=18563 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||||||||||| ||||| |||||||| ||||||| |||||| ||||||||||| Sbjct 10096 GTGCTGGGGATAGATCATTGTAATTATTGATCTTCAATTAGGAATTCCTAGTAAGCG 10040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946604817408