Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq35373 91.5 5e-16 seq13295 91.5 5e-16 seq28760 75.2 4e-11 >seq35373 Length=127 Score = 91.5 bits (100), Expect = 5e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| ||||||||| || | |||||| ||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGCGGTAGCTAGGGGGGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq13295 Length=127 Score = 91.5 bits (100), Expect = 5e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| ||||||||| || | |||||| ||| Sbjct 120 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGCGGTAGCTAGGGGCGAA 61 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 60 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 6 >seq28760 Length=108 Score = 75.2 bits (82), Expect = 4e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| ||||||||| || | |||||||||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGCGGTAGCTAGGGGTGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 ||||||| ||| ||| | ||||| || |||| ||||| Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAA 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688538322944