Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq39968 473 4e-131 seq44820 343 4e-92 >seq39968 Length=1275 Score = 473 bits (524), Expect = 4e-131 Identities = 449/578 (78%), Gaps = 74/578 (13%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 610 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 669 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 670 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 729 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 730 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 789 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 790 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 849 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCA--------A 279 | ||||| ||||||| || | ||||| |||||||||||| | Sbjct 850 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACCAGGAGATTGA 909 Query 280 GGAGCC-CCGAAGG--GCGTTGGTTTTTTATCTAATAAATACACCCCT-------TCCGA 329 | |||| | || || |||||||| | |||||||||||| |||| | ||| Sbjct 910 GTAGCCATTGCTGGCTACGCTGGTTTTTAACCTAATAAATACATCCCTCTGCGCATGCGA 969 Query 330 AG-----------------------------TCGGGGTTTTTAGCATGTATTAGCTCTAG 360 | ||||| || ||||||||||||||||| Sbjct 970 GGACAGAGCCGTGAAGCCCCATCCCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAG 1029 Query 361 AATTACCACGGTTATCCATGTAG-------------TAAGGTACTATCAAATAAACGATA 407 |||||||||||||||||| |||| ||| || ||||||||||| ||| Sbjct 1030 AATTACCACGGTTATCCAAGTAGGTAAAAAAAGACAAAAGAGACCATCAAATAAACTATA 1089 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCA 466 |||||||||||||||||| |||||| || | ||||| | ||||||||||||||||||| Sbjct 1090 ACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGCA 1149 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||| Sbjct 1150 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1187 >seq44820 Length=2078 Score = 343 bits (380), Expect = 4e-92 Identities = 257/296 (87%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 1735 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 1794 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1795 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 1854 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1855 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 1914 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1915 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 1974 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG 283 | ||||| ||||||| || | ||||| ||||||||||| ||||| Sbjct 1975 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACC-AGGAG 2029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509450925056