Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq60463 284 1e-71 seq59610 197 1e-45 >seq60463 Length=11997 Score = 284 bits (314), Expect = 1e-71 Identities = 927/1425 (65%), Gaps = 40/1425 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| |||||||||||||| || || || | | ||| | ||| |||||||||||||| Sbjct 9509 ATCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGT 9568 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||||||||| ||||| || ||||| |||||||| | | || || | ||||| Sbjct 9569 CTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCGAACGAGGGCTC 9628 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCA-CGATCTGCAGCCA 65255 | ||| | | || | |||||| ||||| ||||||| | | | | ||||| || |||| Sbjct 9629 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGT-AGGCCGAGCGATCAGCGGCCA 9687 Query 65256 TGTCAATGAT-ACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 |||| ||||| ||| || || | |||||| ||||||||||||| || | | | || Sbjct 9688 TGTCGATGATGACG-CGCTGCGGGAGCTCCCACACGGTCTTGTACA-GCTTCTTGATGTC 9745 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC-- 65371 || |||||||| ||| ||||||||| | || |||| | | | | || | Sbjct 9746 GTCGGGGATCTCCTCGATGCGCTGGACTGAGC--CGTTGTGCGA-GACGAGCTTGTTCTT 9802 Query 65372 -ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430 | || | ||||| | || | || | | | | ||| |||| ||| Sbjct 9803 GAGCGCCGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAGGTGCTCGTTGACGAC 9862 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||| ||||||| || | || ||| |||||||||| |||| ||| |||||| | Sbjct 9863 GGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCA 9922 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| || || || | || || || || |||||||| || || | | || Sbjct 9923 CTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGA 9982 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTT 65610 ||| |||| |||| | | |||||| || | | |||||| |||| | || Sbjct 9983 GTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCCCAC--CTGT-- 10038 Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670 || || || | || ||| | || | || || | || | || || || || Sbjct 10039 -CCGACGGCA-CGACTCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCC 10096 Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730 | | | ||| ||||| ||| || || | || | || ||||| Sbjct 10097 CTCATAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGC 10156 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 || ||||||||||| ||| || || || || || ||||| |||||||| |||| Sbjct 10157 GTGGTAGATGGTCTCGAAGATGGCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGG 10216 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 | || | | || ||||||||| || || |||||||| |||||||| | || Sbjct 10217 GTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCAATGCCGATGGGCCTGTG 10276 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 |||| || || | ||||| || || |||||||| ||||| ||||| | || Sbjct 10277 GCGCATGTTCGAGTTGCGGGCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTT 10336 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTA 65968 | || || ||||| | |||| ||||| ||| | | | ||||| | Sbjct 10337 GAGGTTCTTGGTGACCACCTTCACG--ACGTCGTGCAGCTTCTTGTGGTCAAACT----- 10389 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 | || | | || || |||||||| || || || || || |||||||| Sbjct 10390 CGCCGTTGGTGA-TG------------AACTTGGGCAGCGCGAGCGAGGCCAGGTTGCAC 10436 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || || | |||||| || | || |||| ||| | || |||||||| || | | Sbjct 10437 ACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGG 10496 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 |||||||| | | ||| || || ||||| ||||| ||||||||||||| |||||| Sbjct 10497 ATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCATCCTTGTACAGCATGTAG 10556 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || ||||||||||| | || ||||| | ||||||| ||| || | | ||||| ||| Sbjct 10557 GGCGTGCCGGTCTCGATCTGAGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACC 10616 Query 66209 GTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 || ||| | || | | ||||| | ||||| | ||||| | ||| Sbjct 10617 ACGCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCC 10676 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || || |||||| || | || || || | |||||||| || || || Sbjct 10677 CACGAGTCAAACAGACCGGGGGCTTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCATC 10736 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || || || ||| || ||||| || ||||| ||| |||||||||||||||| || || Sbjct 10737 TCCACGCGCTTCATGAAGAGATCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGG 10796 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 | |||||| ||||||| || || || ||||||||| ||||||||||| || ||||| Sbjct 10797 TTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAG 10856 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493 || || |||||||||||||| | ||| | || || || || ||| Sbjct 10857 GGCTCGAGGTAGATGGCGAAAGCACCCTTGCGCTTACCACCTCCT 10901 >seq59610 Length=50575 Score = 197 bits (218), Expect = 1e-45 Identities = 403/592 (68%), Gaps = 10/592 (2%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||||||| | || || ||| |||||||| ||||| || Sbjct 4767 CGATTCGTGCTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAG 4826 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CG 61172 || ||||||||||||| ||||| |||||| || | |||||||| ||||||| || Sbjct 4827 GCCTCCTTCTGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAATCG 4886 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | | | || || || ||||| || || || |||| ||||| || || || Sbjct 4887 CTGAGCAA-CGACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCGGCCAGCGA 4945 Query 61233 CGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGC 61292 ||| ||||| ||||| | | || ||| | ||||||| || ||| | ||||| Sbjct 4946 CGGCATCGTGGCCGAGAACCTCGCCGGCCGCTTCATGAAGGAGGTCCAGGTGCCCGAGGC 5005 Query 61293 GCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGT 61352 ||| || |||||||||||||| || ||||| ||||| ||||||| ||||||||| | Sbjct 5006 GCGCTGCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCT 5065 Query 61353 TCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGA 61412 |||||||| || ||| ||| ||| | | || || || | ||| |||||||| Sbjct 5066 CCTCATCGACACCTACGTCAAGGACCACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGA 5125 Query 61413 GACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTACAA 61471 ||| | || |||| ||| ||| || || ||||| | || |||||| || || | Sbjct 5126 GACCGTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGG 5185 Query 61472 CG-----GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTT 61526 || | || |||| || || | | | ||| || | |||||||| | || || Sbjct 5186 CGGTGCCGAGACCTTTGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTT 5245 Query 61527 CAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | || | | | || | | ||||| ||| | ||||| || || || |||||||| || Sbjct 5246 CTCCGGCAGCTTCTG-CTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCG 5304 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||||| || ||| |||| |||||||||||| | || || || ||||| Sbjct 5305 CCTTCAGTAACGAGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC 5356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397263536959040