Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22775 235 1e-59 seq8725 168 1e-39 >seq22775 Length=2291 Score = 235 bits (260), Expect = 1e-59 Identities = 224/278 (81%), Gaps = 20/278 (7%) Strand=Plus/Minus Query 58 CCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTG- 113 |||||| |||| ||||||| |||||||||||||||||||||||| ||| |||| Sbjct 1536 CCGGGGC-CCAGATCTTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGGCTTTCA 1478 Query 114 --CT-----CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTTG- 164 || ||||||||||||||||| ||||| ||||||||| || | |||||||| Sbjct 1477 ATCTGCCACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTGC 1418 Query 165 ---TTGGTTT-CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTC 220 ||||||| | ||||||| ||||||||||||||||||||| ||||| | |||| Sbjct 1417 GTGTTGGTTTTCGAGGACCGG-GTAATGATTAATAGGGATAGTTGGGGGCATTGATATTT 1359 Query 221 AATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACC 280 |||||||||||||||||||||||||||||| |||| ||| |||||||||| | || Sbjct 1358 AATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATCGACTTCTGCGAAAGCATCTGCC 1299 Query 281 AAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||| |||||||||||||||| Sbjct 1298 AAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 1262 >seq8725 Length=139 Score = 168 bits (186), Expect = 1e-39 Identities = 119/135 (88%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||||| ||||| | | |||| ||||||||||||||||||||||| Sbjct 1 TAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTTG 60 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||||||| |||| ||||| |||||||||| | |||||||||||||||||||||| | Sbjct 61 GATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-AG 119 Query 304 AACGAAAGTTAGGGG 318 ||||||||||||||| Sbjct 120 AACGAAAGTTAGGGG 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914979455104