Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq22879 183 1e-43 >seq22879 Length=6356 Score = 183 bits (202), Expect = 1e-43 Identities = 243/336 (72%), Gaps = 36/336 (11%) Strand=Plus/Plus Query 382 GATGCTGGCGT-AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 2393 GATGCTGGCGGCAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 2452 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTG-----------AAC 489 | |||||||| ||||| |||||||| ||||| | |||||| | ||| Sbjct 2453 CGTGCGCGAGTGTCCGGGTGGCAAACCCGGGCGCGGAGTGAAAGCGGAGGGCGACGTAAC 2512 Query 490 GG-------AGGTGGGAA--------CCCGTGAG--GGT----GCACCATCGACCGATCC 528 || ||||||||| |||| | | ||| |||||| || |||| | Sbjct 2513 GGTCGCCCGAGGTGGGAAGGGGTCGGCCCGCGGGCCGGTCCCCGCACCACCGGCCGACCT 2572 Query 529 TGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 ||| | ||| || || |||| | ||||| || |||||||||||||||||| ||||| Sbjct 2573 GGATTTTCTT--GAAGGGTTTGCGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTGAA 2630 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| | Sbjct 2631 CTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGAC 2690 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| || || | ||| ||||||||||| Sbjct 2691 GTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 2726 Score = 149 bits (164), Expect = 3e-33 Identities = 132/163 (81%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 1794 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 1853 Query 100 ATTGGCC---AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||||| |||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 1854 ATTGGCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTTG 1913 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 1914 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 1955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079483097900