Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq22824 107 5e-21 seq10630 95.1 3e-17 seq8411 95.1 3e-17 seq4452 91.5 4e-16 seq10491 89.7 1e-15 seq6471 87.8 5e-15 seq9630 86.0 2e-14 seq488 86.0 2e-14 seq11178 84.2 6e-14 seq1242 84.2 6e-14 seq5298 82.4 2e-13 seq3597 80.6 7e-13 seq4857 77.0 8e-12 seq1569 75.2 3e-11 seq1568 75.2 3e-11 seq504 75.2 3e-11 >seq22824 Length=1828 Score = 107 bits (118), Expect = 5e-21 Identities = 233/345 (68%), Gaps = 28/345 (8%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| || || | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 772 TACTTGGAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 713 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTG-------TGTAAGA 115 | |||| ||| | | |||||| |||||| ||||| ||| |||| | |||| Sbjct 712 TGGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGTTTTAAGG 653 Query 116 CAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTG 175 || ||| |||| | |||| ||| ||| ||||||||| Sbjct 652 CAAATGTTAAATATAAAGT-TTAAN-----AAT----------ACTAATAGACTAGAGTT 609 Query 176 TGTCAG-AGGGGGGTGGA-ATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | | | || | || | ||| | ||||| ||||||| | ||||| | |||| Sbjct 608 TATTGGGAGATAGCTGTACATT--AAGTGTAAAGGTGAAATTTTTCGATATTTAAAGGAC 551 Query 234 CACCAAT-GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGG 292 | || ||||||||| || || ||| |||||| || | |||| ||||| |||| Sbjct 550 ATTCGATAGGCGAAGGCTGCTATCTACTTTAATACTGACACTGAGGCACAAAAGCATGGG 491 Query 293 GAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 || |||||||||||||| |||||||||||||| ||||| | |||| Sbjct 490 GATCAAACAGGATTAGAGACCCTGGTAGTCCATGCCCTGACCGAT 446 >seq10630 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | | Sbjct 122 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGAC 63 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 ||| |||| ||| | | |||||| |||||| ||||| ||| |||| Sbjct 62 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGTT 18 >seq8411 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| ||| |||||||| || | || Sbjct 21 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCAGTAATACGGAGAGGGC 80 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 ||| |||| ||| | | |||||| |||||| ||||| ||| |||| Sbjct 81 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGTT 125 >seq4452 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| |||||||| || |||||||||||| || | || Sbjct 28 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGTAGTCGCGGTAATACGGAGAGGGC 87 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGG 102 ||| |||| ||| | | |||||| |||||| ||||| ||| Sbjct 88 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGG 127 >seq10491 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGG 75 ||| | | |||||| ||||||||||| |||||||||||| || | ||||| |||| ||| Sbjct 1 AGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGC 60 Query 76 AATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 | | |||||| |||||| ||||| ||| |||| Sbjct 61 ATTAACTGGGTGTAAAGGGTGCGTAGGTGGTT 92 >seq6471 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||| | | |||||| ||||||||||| |||||||||||| || | ||||| |||| || Sbjct 5 AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCA 64 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 | | |||||| |||||| ||||| ||| |||| Sbjct 65 CATTGACTGGGTGTAAAGGGTGCGTAGGTGGTT 97 >seq9630 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||| ||||||| |||||||||||| || | || Sbjct 95 TACTTGAAGGAGAAGCCCTGACTAACTTCGTACCAGCAGTCGCGGTAATACGGAGAGGGC 36 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGC 97 ||| |||| ||| | | |||||| |||||| |||| Sbjct 35 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGC 1 >seq488 Length=114 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||| ||||||| || | || Sbjct 20 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGATAATACGGAGAGGGC 79 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGC 97 ||| |||| ||| | | |||||| |||||| |||| Sbjct 80 AAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGC 114 >seq11178 Length=127 Score = 84.2 bits (92), Expect = 6e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| ||||||||||| |||||||||||| || | ||||| |||| ||| | | |||| Sbjct 127 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTG 68 Query 84 GGCGTAAAGCGTGCGCAGGCGGTT 107 || ||||| ||||| ||| |||| Sbjct 67 GGTATAAAGGGTGCGTAGGTGGTT 44 >seq1242 Length=127 Score = 84.2 bits (92), Expect = 6e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| ||||||||||| |||||||||||| || | ||||| |||| ||| | | |||| Sbjct 124 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTG 65 Query 84 GGCGTAAAGCGTGCGCAGGCGGTT 107 | |||||| ||||| ||| |||| Sbjct 64 TGTGTAAAGGGTGCGTAGGTGGTT 41 >seq5298 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| |||||||||| |||||||||||| || | || Sbjct 36 TACTTGAAGGAGAAGCCCTGACTAACTTTGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 95 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAG 92 ||| |||| ||| | | |||||| |||||| Sbjct 96 AAGTGTTATTCGCATTGACTGGGTGTAAAG 125 >seq3597 Length=127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| ||| |||||| ||||||||||| |||||||||||| || | || Sbjct 82 TACTTGAAGGAGAAGCCCCGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 23 Query 63 AAGCGTTAATCGGAATTACTGG 84 ||| |||| ||| | | ||||| Sbjct 22 AAGTGTTATTCGCATTGACTGG 1 >seq4857 Length=127 Score = 77.0 bits (84), Expect = 8e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 31 CGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAA 90 ||||||||||| |||||||||||| || | ||||| |||| ||| | | |||||| |||| Sbjct 1 CGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAA 60 Query 91 AGCGTGCGCAGGCGGTT 107 || |||| ||| |||| Sbjct 61 AGGATGCGTAGGTGGTT 77 >seq1569 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 32 GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAA 91 |||||||||| |||||||||||| || | ||||| |||| ||| | | |||||| ||||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAAA 60 Query 92 GCGTGCGCAGGCGGTT 107 | | ||| ||| |||| Sbjct 61 GGGAGCGTAGGTGGTT 76 >seq1568 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 32 GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAA 91 |||||||||| |||||||||||| || | ||||| |||| ||| | | |||||| ||||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAAA 60 Query 92 GCGTGCGCAGGCGGTT 107 | | ||| ||| |||| Sbjct 61 GGGGGCGTAGGTGGTT 76 >seq504 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 32 GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAA 91 |||||||||| |||||||||||| || | ||||| |||| ||| | | |||||| ||||| Sbjct 127 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGTGTAAA 68 Query 92 GCGTGCGCAGGCGGTT 107 | | ||| ||| |||| Sbjct 67 GGGCGCGTAGGTGGTT 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289289232192