Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq17499 127 3e-27 seq15055 102 1e-19 seq875 91.5 2e-16 seq11762 87.8 2e-15 seq6799 87.8 2e-15 seq6106 82.4 1e-13 seq13401 73.4 5e-11 >seq17499 Length=483 Score = 127 bits (140), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 13/206 (6%) Strand=Plus/Minus Query 16 CCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTA 75 ||||||||| ||||| || ||||||||| || | ||| ||| | |||||||||||| Sbjct 483 CCGGGCAGGTGTCAGACCCTATACATCGTTTTGCAA-CTTAGCAGAGTCCTGTGTTTTTA 425 Query 76 GTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCA 135 ||||||||||||| ||||||||||| | |||| |||| | || || | Sbjct 424 GTAAACAGTCGCTACCCTCTATTCTGT------TACACCTACTCACAATTTC--TCGC-- 375 Query 136 GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGT 195 || || |||||||||||||||||||||| | ||||||||||| |||||| | | || Sbjct 374 -GAGAGGTACCCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTCAACGTTGT 316 Query 196 TCACCCGAACGCCTTAGTATTCTCTA 221 || ||| | | ||||| ||| ||||| Sbjct 315 TCTCCC-ATCACCTTAATATACTCTA 291 >seq15055 Length=233 Score = 102 bits (112), Expect = 1e-19 Identities = 128/173 (74%), Gaps = 12/173 (7%) Strand=Plus/Minus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||||||||||| |||| || ||||||||| |||| ||| ||| | |||||||||| Sbjct 231 CACCGGGCAGGTATCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTT 173 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 ||||||||||||||| |||||||| |||| || | | | | || ||| Sbjct 172 TAGTAAACAGTCGCTACCCTCTAT--TCTGTTACACCTATTA--TTAA-------TTCCT 124 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 | | || || ||||||||||||||||||| || |||||||||| |||||| Sbjct 123 TAATAAAGGTACTCCTTCTCCCGAAGTTACGGAGCTATTTTGCCGAGTTCCTT 71 >seq875 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| || ||||||||||| |||| || ||||||||| |||| ||| ||| | || Sbjct 120 CCTTTCAGCACCGGGCAGGTATCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGCCC 62 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||| |||||||||||| ||||||||||| Sbjct 61 TGTGTTTTTAATAAACAGTCGCTACCCTCTATTCT 27 >seq11762 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| || ||||||||||| |||| || ||||||||| |||| ||| ||| | || Sbjct 123 CCTTTCAGCACCGGGCAGGTATCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCC 65 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 ||||||||| |||||||||||| ||||||||||| Sbjct 64 CGTGTTTTTAATAAACAGTCGCTACCCTCTATTCT 30 >seq6799 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| || ||||||||||| |||| || ||||||||| |||| ||| || | || Sbjct 12 CCTTTCAGCACCGGGCAGGTATCAGACCCTATACATCGTTTTACAA-CTTAGCTGAGTCC 70 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||| |||||||||||| ||||||||||| Sbjct 71 TGTGTTTTTAATAAACAGTCGCTACCCTCTATTCT 105 >seq6106 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11 CATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGT 70 || ||||||||||| |||| || ||||||||| |||| ||| ||| | ||||||| Sbjct 127 CAGCACCGGGCAGGTATCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGT 69 Query 71 TTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||| |||||||||||| ||||||||||| Sbjct 68 TTTTTATAAACAGTCGCTACCCTCTATTCT 39 >seq13401 Length=127 Score = 73.4 bits (80), Expect = 5e-11 Identities = 69/87 (79%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| || ||||||||||| | || || ||||||||| |||| ||| ||| | || Sbjct 42 CCTTTCAGCACCGGGCAGGTATTAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCC 100 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCC 92 |||||||||| |||||||||||| ||| Sbjct 101 TGTGTTTTTAATAAACAGTCGCTACCC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694237892754