Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq13401 77.0 3e-12 seq11762 77.0 3e-12 seq7710 77.0 3e-12 seq6799 77.0 3e-12 seq875 77.0 3e-12 seq10926 73.4 4e-11 >seq13401 Length=127 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||||| ||||||| || | || || ||||||||| | | Sbjct 122 GCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATAGGGTCTAA 63 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||| | ||||| || Sbjct 62 TACCTGCCCGGTGCTGAAAGGTAAA 38 >seq11762 Length=127 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||| | ||||||| || | || || ||||||||| ||| Sbjct 43 GCGACTGTTTATTAAAAACACGGGACTCTGCTAAGTTGTAAAACGATGTATAGGGTCTGA 102 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||| | ||||| || Sbjct 103 TACCTGCCCGGTGCTGAAAGGTAAA 127 >seq7710 Length=96 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||||| ||||||| || | || || ||||||||| ||| Sbjct 95 GCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATAGGGTCTGA 36 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||| | ||||| || Sbjct 35 TATCTGCCCGGTGCTGAAAGGTAAA 11 >seq6799 Length=127 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||||| |||| || || | || || ||||||||| ||| Sbjct 92 GCGACTGTTTATTAAAAACACAGGACTCAGCTAAGTTGTAAAACGATGTATAGGGTCTGA 33 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||| | ||||| || Sbjct 32 TACCTGCCCGGTGCTGAAAGGTAAA 8 >seq875 Length=127 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||||| |||||| || | || || ||||||||| ||| Sbjct 40 GCGACTGTTTATTAAAAACACAGGGCTCTGCTAAGTTGTAAAACGATGTATAGGGTCTGA 99 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||| | ||||| || Sbjct 100 TACCTGCCCGGTGCTGAAAGGTAAA 124 >seq10926 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 70 GACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACG 129 ||||||||||||||||||||| ||||||| || | || || ||||||||| ||| Sbjct 1 GACTGTTTATTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATAGGGTCTGATA 60 Query 130 CCTGCCCGGTGCCGGAAGGTTAA 152 ||| |||||||| | ||||| || Sbjct 61 CCTACCCGGTGCTGAAAGGTAAA 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476688691338