Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq13112 100 9e-19 seq1217 96.9 1e-17 seq8355 91.5 4e-16 seq3147 91.5 4e-16 seq373 89.7 2e-15 seq6199 86.0 2e-14 seq2617 84.2 7e-14 seq14886 75.2 3e-11 >seq13112 Length=127 Score = 100 bits (110), Expect = 9e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||||||||| Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGCAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 ||||||||||| || ||||| ||||| |||||||| |||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTG 109 >seq1217 Length=127 Score = 96.9 bits (106), Expect = 1e-17 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGGAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 ||||||||||| || ||||| ||||| |||||||| |||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTG 109 >seq8355 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||| ||||| || Sbjct 13 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGATGGAGTAT 72 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 ||||||||||| || ||||| ||||| |||||||| |||| Sbjct 73 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTG 115 >seq3147 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||| ||| || Sbjct 11 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTAGAGTAT 70 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 ||||||||||| || ||||| ||||| |||||||| |||| Sbjct 71 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTG 113 >seq373 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || ||| || | | ||||||||||| || Sbjct 31 TACGACCGCAAGGTTAAAACTCAAAGAAACTGATGGAAGATTGTATAAGCGGTGGAGTAT 90 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 ||||||||||| || ||||| ||||| |||||||| Sbjct 91 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAA 127 >seq6199 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || | |||| | | ||||||||||| || Sbjct 33 TACGACCGCAAGGTTAAAACTCAAAGAAACTAACGGAAGATTGTATAAGCGGTGGAGTAT 92 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 ||||||||||| || ||||| ||||| |||||| Sbjct 93 GTGGTTTAATTTGATATAACGCAAAGAATCTTACC 127 >seq2617 Length=91 Score = 84.2 bits (92), Expect = 7e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 9 CAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTA 68 ||||||| |||||||||| || |||||| | | ||||||||||| |||||||||| Sbjct 1 CAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTATGTGGTTTA 60 Query 69 ATTCGAAGCAACGCGAAGAACCTTACCAA 97 |||||| ||||| ||||| |||||||| Sbjct 61 ATTCGATATAACGCAAAGAATCTTACCAA 89 >seq14886 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 10 AAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAA 69 |||||| |||||||||| || |||||| | | ||||||||||| ||||||||||| Sbjct 127 AAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTATGTGGTTTAA 68 Query 70 TTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 || | ||||| ||||| |||||||| |||| Sbjct 67 TTTAATATAACGCAAAGAATCTTACCAACCCTTG 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503637566080