Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq22775 201 2e-49 >seq22775 Length=2291 Score = 201 bits (222), Expect = 2e-49 Identities = 114/116 (98%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 756 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAA 815 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 871 Score = 161 bits (178), Expect = 2e-37 Identities = 108/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 576 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACC-AACCATA 131 |||||||| ||||| || ||||| |||||||||||||||| ||| | || |||| || Sbjct 577 AAACTTCCGCTGGCTAGACGCCAACAGTCCCTCTAAGAAGCGCAGACGCCGAACCCTA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796613987538