Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2262 91.5 3e-16 seq736 91.5 3e-16 seq4720 87.8 4e-15 >seq2262 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 97/124 (78%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCT 100 || ||||| |||||||| ||||||| ||||||| ||||||||| ||| || || | | Sbjct 123 CTCGATCAAGCTTTCGCTCATTGTCAAATATTCTCCACTGCTGCCCTTTTATAAGACT-T 65 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||| | Sbjct 64 AGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTTGG 6 Query 161 CTTG 164 |||| Sbjct 5 CTTG 2 >seq736 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCTGGACCG 106 || |||||||| ||||||| ||||||| ||||||||| ||| || || | ||| ||| Sbjct 1 CAAGCTTTCGCTCATTGTCAAATATTCTCCACTGCTGCCCTTTTATAAGACT-TGGGCCG 59 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 | | | ||| ||| |||| |||||||| |||||| ||||| || | ||||| | |||| | Sbjct 60 T-TTTTAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTTGGCTTGTT 118 Query 167 GAGCCATTA 175 ||| |||| Sbjct 119 GAGAAATTA 127 >seq4720 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 64 GTCCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 122 ||| ||||||| ||||||||| ||| || || | ||| |||| | ||||| ||| || Sbjct 1 GTCAAATATTCTCCACTGCTGCCCTTTTATAAGACT-TGGGCCGT-TTTCAGTCCCAATG 58 Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 || || ||||| |||||| ||||| || | ||||| | |||| |||| |||||| || | Sbjct 59 TGGCTAATCATTCTCTCAAACCAGCTAAGCATCGTTGGCTTGTTGAGAAATTACCCCAAC 118 Query 183 AACTAGCTA 191 ||||| ||| Sbjct 119 AACTACCTA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071741669440