Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1922 87.8 7e-15 >seq1922 Length=241 Score = 87.8 bits (96), Expect = 7e-15 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 77 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTC 136 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 ||||||| | || | ||||||| | | | |||| || |||||||| |||| || Sbjct 137 ACCCCTAGCTACTGCTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817161994752