Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq16634 75.2 2e-11 seq4720 75.2 2e-11 seq22824 73.4 8e-11 seq8750 73.4 8e-11 >seq16634 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 42 CCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAAC 100 ||||||||||| | || || || ||||||| | |||||||||||||||| | ||| Sbjct 126 CCACTGCTGCC-CTTTTATAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATT 69 Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||| | || |||| ||||| |||||| || | |||| | || ||||||||||||| Sbjct 68 CTCTTAAACCAGCTAAGCATCGTTGGCTTGTTGAGAAATTACCCCAACAACTACCTAATC 9 >seq4720 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||| | ||||||||||| | || || || ||||||| | |||||||||||||||| Sbjct 5 AATATTCTCCACTGCTGCC-CTTTTATAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGC 62 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 ||| |||||| || |||| ||||| |||||| || | |||| | || ||||| Sbjct 63 TAATCATTCTCTCAAACCAGCTAAGCATCGTTGGCTTGTTGAGAAATTACCCCAACAACT 122 Query 153 ACCTA 157 ||||| Sbjct 123 ACCTA 127 >seq22824 Length=1828 Score = 73.4 bits (80), Expect = 8e-11 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 |||||||| | |||||||||||||||| | ||| |||||| || |||| ||||||| Sbjct 945 TGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCG 1003 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| || ||||||||||||| Sbjct 1004 GCTTGTTGAATAATTACTACAACAACTACCTAATC 1038 >seq8750 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 |||||||| | |||||||||||||||| | ||| |||||| || |||| ||||| Sbjct 122 TGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTTA 64 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || | |||| | || ||||||||||||| Sbjct 63 GCTTGTTGAGAAATTACCCCAACAACTACCTAATC 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998159405568