Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq14987 84.2 5e-14 seq14117 73.4 9e-11 seq14057 73.4 9e-11 seq13471 73.4 9e-11 seq7104 73.4 9e-11 seq2115 73.4 9e-11 seq721 73.4 9e-11 >seq14987 Length=196 Score = 84.2 bits (92), Expect = 5e-14 Identities = 100/132 (76%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| || Sbjct 1 GTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT-TA 59 Query 327 CGCAACTCCACATCCTTTC--CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 ||| | || |||| |||| | | | | | | || | ||||||||| |||| Sbjct 60 TAACACTTGAAATTATTTCATACACTTAATTATC-TTGAAGGACTTTAGCTGATATTCTG 118 Query 385 GGCTGTTTCCCT 396 |||||||||||| Sbjct 119 GGCTGTTTCCCT 130 >seq14117 Length=64 Score = 73.4 bits (80), Expect = 9e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| Sbjct 2 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT 59 >seq14057 Length=199 Score = 73.4 bits (80), Expect = 9e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| Sbjct 59 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT 2 >seq13471 Length=64 Score = 73.4 bits (80), Expect = 9e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| Sbjct 1 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT 58 >seq7104 Length=92 Score = 73.4 bits (80), Expect = 9e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| Sbjct 34 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT 91 >seq2115 Length=64 Score = 73.4 bits (80), Expect = 9e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| Sbjct 64 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT 7 >seq721 Length=67 Score = 73.4 bits (80), Expect = 9e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||| |||| Sbjct 5 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAATTGT 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177316221952