Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq10630 91.5 2e-16 seq10491 91.5 2e-16 seq8411 91.5 2e-16 seq4452 91.5 2e-16 seq6471 87.8 3e-15 seq11178 86.0 1e-14 seq9630 86.0 1e-14 seq5298 86.0 1e-14 seq1242 86.0 1e-14 seq488 86.0 1e-14 seq22824 84.2 4e-14 seq504 84.2 4e-14 seq16392 80.6 4e-13 seq8476 80.6 4e-13 seq1569 80.6 4e-13 seq1568 80.6 4e-13 seq4857 77.0 5e-12 seq3597 77.0 5e-12 seq16975 73.4 7e-11 seq51 73.4 7e-11 >seq10630 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||| | || ||||||||| Sbjct 20 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGTCCTCTCCGTATTACC 79 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 80 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 122 >seq10491 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 90 CCACCTACGCACCCTTTACACCCAGTTAATGCGAATAACACTTGCCCTCTCCGTATTACC 31 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCT 277 ||| ||||||||||| |||||| | |||| Sbjct 30 GCGACTGCTGGCACGAAGTTAGTCAGGGCT 1 >seq8411 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||| Sbjct 123 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACT 64 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 63 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 21 >seq4452 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||||||| Sbjct 127 CCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCG 68 Query 251 GCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || |||||||| |||||| | ||||| | | ||| ||| Sbjct 67 ACTACTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 28 >seq6471 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| | ||||| |||||| || ||||||||| Sbjct 95 CCACCTACGCACCCTTTACACCCAGTCAATGTGAATAACACTTGCCCTCTCCGTATTACC 36 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||| ||||||||||| |||||| | ||||| Sbjct 35 GCGACTGCTGGCACGAAGTTAGTCAGGGCTT 5 >seq11178 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||| ||||| | ||| || ||||| |||||| || ||||||||| Sbjct 46 CCACCTACGCACCCTTTATACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 105 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 106 GCGACTGCTGGCACGAAGTTAG 127 >seq9630 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||||| Sbjct 4 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGG 63 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||| | ||||| | | ||| ||| Sbjct 64 TACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 95 >seq5298 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||||| Sbjct 127 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGG 68 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||| | ||||| | | ||| ||| Sbjct 67 CACAAAGTTAGTCAGGGCTTCTCCTTCAAGTA 36 >seq1242 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||||| || | ||| || ||||| |||||| || ||||||||| Sbjct 43 CCACCTACGCACCCTTTACACACAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 102 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 103 GCGACTGCTGGCACGAAGTTAG 124 >seq488 Length=114 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || ||||||| |||| ||||||| Sbjct 111 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTATCGCGACTGCTGG 52 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||| |||||| | ||||| | | ||| ||| Sbjct 51 CACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 20 >seq22824 Length=1828 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| | ||| || ||||||||| Sbjct 670 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACCAGCCCTCTCCGTATTACC 729 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||| ||||||||||| |||||| | ||||| Sbjct 730 GCGACTGCTGGCACGAAGTTAGTCAGGGCTT 760 >seq504 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| ||||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 54 CCACCTACGCGCCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 113 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 114 GCGACTGCTGGCAC 127 >seq16392 Length=69 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 200 CCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGC 259 |||||||||||| | ||| || ||||| |||||| || |||||||||||| |||||||| Sbjct 69 CCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGGC 10 Query 260 ACGTAGTTA 268 ||| ||||| Sbjct 9 ACGAAGTTA 1 >seq8476 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||||| ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 56 CCACCTACACACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 115 Query 248 GCGGCTGCTGGC 259 ||| |||||||| Sbjct 116 GCGACTGCTGGC 127 >seq1569 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 74 CCACCTACGCTCCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq1568 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 74 CCACCTACGCCCCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq4857 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 75 CCACCTACGCATCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 16 Query 248 GCGGCTGCTGGCACG 262 ||| ||||||||||| Sbjct 15 GCGACTGCTGGCACG 1 >seq3597 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 209 CCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTA 268 ||| | ||| || ||||| |||||| || |||||||||||| ||||||||||| ||||| Sbjct 1 CCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGGCACGAAGTTA 60 Query 269 GCCGTGGCTTATTCCTCAGGTA 290 | || ||||| | | ||| ||| Sbjct 61 GTCGGGGCTTCTCCTTCAAGTA 82 >seq16975 Length=65 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||||| Sbjct 63 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGG 4 Query 259 CAC 261 ||| Sbjct 3 CAC 1 >seq51 Length=68 Score = 73.4 bits (80), Expect = 7e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||||||| Sbjct 68 CCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCG 9 Query 251 GCTGCTGG 258 ||||||| Sbjct 8 ACTGCTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828606517158