Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq22775 140 3e-31 seq8725 80.6 3e-13 >seq22775 Length=2291 Score = 140 bits (154), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 19/203 (9%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTG---CT---- 54 |||| ||||||| |||||||||||||| ||||||||| ||| |||| || Sbjct 1529 CCAGATCTTTTACCGTGAAAAAATTAGAGTGTTCAAAGCGGGCAGGCTTTCAATCTGCCA 1470 Query 55 -CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTTG-----TAGG 107 ||||||||||| ||||| ||||| ||||||||| || | |||||||| | | Sbjct 1469 CCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTGCGTGTTGGT 1410 Query 108 TTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTC 167 |||| ||||||| |||||||| |||| ||||||| ||||| | |||| ||||||| Sbjct 1409 TTTCGAGGACCGG--GTAATGATTAATAGGGATAGTTGGGGGCATTGATATTTAATTGTC 1352 Query 168 AAAGGTGAAATTCTTGGATTTAT 190 | ||||||||||||||||||||| Sbjct 1351 AGAGGTGAAATTCTTGGATTTAT 1329 >seq8725 Length=139 Score = 80.6 bits (88), Expect = 3e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||||||| ||||| | | |||| |||||||| |||||||||||||| Sbjct 1 TAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTTG 60 Query 184 GATTTAT 190 ||||||| Sbjct 61 GATTTAT 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511880473920