Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq10305 123 4e-26 seq8297 118 2e-24 seq2644 118 2e-24 seq1673 118 2e-24 seq6732 113 7e-23 seq2580 109 9e-22 seq7122 107 3e-21 seq760 107 3e-21 seq665 104 4e-20 seq16688 95.1 2e-17 seq16528 95.1 2e-17 seq370 95.1 2e-17 seq7214 87.8 3e-15 seq2301 86.0 1e-14 seq1629 84.2 3e-14 seq1628 84.2 3e-14 seq7915 82.4 1e-13 seq7916 77.0 5e-12 seq5997 77.0 5e-12 seq2885 77.0 5e-12 seq16687 75.2 2e-11 seq14228 75.2 2e-11 seq12621 75.2 2e-11 seq2393 75.2 2e-11 seq3086 73.4 6e-11 seq2319 73.4 6e-11 seq1377 73.4 6e-11 >seq10305 Length=127 Score = 123 bits (136), Expect = 4e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 124 GATAGGATCCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGC 65 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 64 AAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATCG 9 >seq8297 Length=101 Score = 118 bits (130), Expect = 2e-24 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||||||||| |||||||||| ||| || ||||||| ||| Sbjct 1 GATAGGATCCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCACTTTAATAGGC 60 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 |||||||| ||||||||| ||| || |||| |||||||| Sbjct 61 GAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATG 100 >seq2644 Length=127 Score = 118 bits (130), Expect = 2e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 126 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 67 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 66 TACCCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATCG 19 >seq1673 Length=127 Score = 118 bits (130), Expect = 2e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 3 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 62 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 63 TCACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATCG 110 >seq6732 Length=127 Score = 113 bits (124), Expect = 7e-23 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||||||||| |||||| ||| || || ||||||| ||| Sbjct 20 GATAGGATCCGAACTGTCTCACGACGTTCTAAACCCAACTCACGCACCACTTTAATAGGC 79 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAG 266 |||||||| ||||||||| ||| || |||| |||||||| || ||| Sbjct 80 GAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAG 126 >seq2580 Length=127 Score = 109 bits (120), Expect = 9e-22 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||||||||| |||||| || ||| || ||||||| ||| Sbjct 24 GATAGGATCCGAACTGTCTCACGACGTTCTAAACCCAACTTACGTACCACTTTAATAGGC 83 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGA 262 |||||||| ||||||||| ||| || |||| |||||||| || Sbjct 84 GAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGA 126 >seq7122 Length=127 Score = 107 bits (118), Expect = 3e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||||||||| |||| | ||| ||| || ||||||| ||| Sbjct 29 GATAGGATCCGAACTGTCTCACGACGTTCTAAACCTAACTCACGTACCACTTTAATAGGC 88 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 |||||||| ||||||||| ||| || |||| ||||||| Sbjct 89 GAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGAT 127 >seq760 Length=127 Score = 107 bits (118), Expect = 3e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||||||||| |||| | ||| ||| || ||||||| ||| Sbjct 29 GATAGGATCCGAACTGTCTCACGACGTTCTAAACCAAACTCACGTACCACTTTAATAGGC 88 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 |||||||| ||||||||| ||| || |||| ||||||| Sbjct 89 GAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGAT 127 >seq665 Length=127 Score = 104 bits (114), Expect = 4e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 125 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 66 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||| |||||||| || ||| |||||||| Sbjct 65 CACCTACAGCTCCAGGATGTGATGAGTCGACATCG 31 >seq16688 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 83 GATAGGATCCGAACTGTCTTACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGC 24 Query 220 GAACAGCCCAACCCTTGGGACC 241 |||||||| ||||||||| ||| Sbjct 23 GAACAGCCTAACCCTTGGAACC 2 >seq16528 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| |||||||| |||||| ||| ||| || ||||||| ||| Sbjct 85 GATAGGATCCGAACTGTCTCATGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGC 26 Query 220 GAACAGCCCAACCCTTGGGACC 241 |||||||| ||||||||| ||| Sbjct 25 GAACAGCCTAACCCTTGGAACC 4 >seq370 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||| ||||| |||||| ||| ||| || ||||||| ||| Sbjct 40 GATAGGATCCGAACTGTCTCACGATGTTCTAAACCCAACTCACGTACCACTTTAATAGGC 99 Query 220 GAACAGCCCAACCCTTGGGACC 241 |||||||| ||||||||| ||| Sbjct 100 GAACAGCCTAACCCTTGGAACC 121 >seq7214 Length=71 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230 ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| || Sbjct 71 AACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAA 12 Query 231 CCCTTGGGACC 241 ||||||| ||| Sbjct 11 CCCTTGGAACC 1 >seq2301 Length=85 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| ||| Sbjct 1 GACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACC 60 Query 242 TACTTCAGCCCCAGGATGAGACGAG 266 | |||| |||||||| || ||| Sbjct 61 GCCCACAGCTCCAGGATGTGATGAG 85 >seq1629 Length=127 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| || ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 74 GATAGGATCCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGC 15 Query 220 GAACAGCCCAACCC 233 |||||||| ||||| Sbjct 14 GAACAGCCTAACCC 1 >seq1628 Length=67 Score = 84.2 bits (92), Expect = 3e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 66 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 7 Query 228 CAACCC 233 ||||| Sbjct 6 TAACCC 1 >seq7915 Length=71 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 69 GATAGGATCCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGC 10 Query 220 GAACAGCC 227 |||||||| Sbjct 9 GAACAGCC 2 >seq7916 Length=64 Score = 77.0 bits (84), Expect = 5e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 61 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 2 >seq5997 Length=77 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| || || Sbjct 76 CCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGA 17 Query 266 GCCGACATCG 275 | |||||||| Sbjct 16 GTCGACATCG 7 >seq2885 Length=64 Score = 77.0 bits (84), Expect = 5e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 62 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 3 >seq16687 Length=64 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 62 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 3 Query 241 C 241 | Sbjct 2 C 2 >seq14228 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261 ||| || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| | Sbjct 126 CGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTG 67 Query 262 ACGAGCCGACATCG 275 | || |||||||| Sbjct 66 ATAAGTCGACATCG 53 >seq12621 Length=76 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 198 CTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| |||||| Sbjct 1 CTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGA 60 Query 258 TGAGACGAGCCGACAT 273 || | ||| |||||| Sbjct 61 TGTAATGAGTCGACAT 76 >seq2393 Length=65 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 64 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 5 Query 241 C 241 | Sbjct 4 C 4 >seq3086 Length=66 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| ||| Sbjct 66 GACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACC 7 >seq2319 Length=127 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| || || Sbjct 126 CCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGA 67 Query 266 GCCGACATCG 275 | ||||||| Sbjct 66 GTTGACATCG 57 >seq1377 Length=127 Score = 73.4 bits (80), Expect = 6e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| |||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 63 GACAGATAGGATCCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 122 Query 216 GGGCG 220 |||| Sbjct 123 AGGCG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780617722728