Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4720 80.6 7e-13 seq2262 80.6 7e-13 seq736 78.8 2e-12 >seq4720 Length=127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 95/125 (76%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTG-CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||| ||||||||| ||| || || | ||| |||| | ||||| ||| |||||| Sbjct 5 AATATTCTCCACTGCTGCCCTTTTATAAGACT-TGGGCCGT-TTTCAGTCCCAATGTGGC 62 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 | |||| |||||| |||||||| | ||||| | || | || | |||||||| ||||| Sbjct 63 TAATCATTCTCTCAAACCAGCTAAGCATCGTTGGCTTGTTGAGAAATTACCCCAACAACT 122 Query 188 AGCTA 192 | ||| Sbjct 123 ACCTA 127 >seq2262 Length=127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 88/113 (78%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCTGGAC 105 |||| |||| ||| |||||| ||||||| ||||||||| ||| || || | | | | Sbjct 119 ATCAAGCTTTCGCTCATTGTCAAATATTCTCCACTGCTGCCCTTTTATAAGACT-TAGGC 61 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||| Sbjct 60 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGT 9 >seq736 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCTGGACCG 107 || |||| ||| |||||| ||||||| ||||||||| ||| || || | ||| ||| Sbjct 1 CAAGCTTTCGCTCATTGTCAAATATTCTCCACTGCTGCCCTTTTATAAGACT-TGGGCCG 59 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 | | | ||| ||| |||||||| |||| |||||| |||||||| | ||||| | || | | Sbjct 60 T-TTTTAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTTGGCTTGTT 118 Query 168 GGGCCATTA 176 | | |||| Sbjct 119 GAGAAATTA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222105426048