Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq22824 176 1e-41 seq10630 118 3e-24 seq8411 114 4e-23 seq10491 111 5e-22 seq6471 111 5e-22 seq4452 107 6e-21 seq11178 102 2e-19 seq1242 102 2e-19 seq9630 98.7 3e-18 seq3597 98.7 3e-18 seq5298 95.1 4e-17 seq4857 93.3 1e-16 seq488 93.3 1e-16 seq1569 91.5 4e-16 seq1568 91.5 4e-16 seq504 91.5 4e-16 seq8476 87.8 5e-15 seq4675 84.2 7e-14 seq14608 82.4 2e-13 seq11690 80.6 8e-13 seq6241 80.6 8e-13 seq11679 78.8 3e-12 seq5071 77.0 1e-11 >seq22824 Length=1828 Score = 176 bits (194), Expect = 1e-41 Identities = 182/231 (79%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGC 334 ||||||||||| ||||||| ||||||||| ||||| |||| || || | |||| | Sbjct 888 GGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGGGT 829 Query 335 GATGA--AGGCCTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACT 389 ||||| |||| | | |||||||||| | || |||||| |||||| | ||||| Sbjct 828 GATGAGAAGGCTTAATTGCCGTAAAGCTCGTTTCGCCAAGGATTATAATGCAATCGTACT 769 Query 390 TG-AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAG 448 || ||||| |||||| | |||||| ||||||||||| |||||||||||| || ||||| | Sbjct 768 TGGAGGAG-AAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCTGG 710 Query 449 CGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||||| || | | ||| ||| |||||||||||||||||||||| |||||| Sbjct 709 TGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 660 >seq10630 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 96/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || || Sbjct 123 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGA 64 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | || ||||| || | | ||| ||| |||||||||||||||||||||| |||||| Sbjct 63 CAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 10 >seq8411 Length=127 Score = 114 bits (126), Expect = 4e-23 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 368 CAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGC 425 |||||| |||||| | |||||||| | ||||||| | |||||| ||||||||||| Sbjct 1 CAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGT 60 Query 426 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAG 485 ||| |||||||| || |||| || ||||| || | | ||| ||| ||||||||||||||| Sbjct 61 CGCAGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAG 119 Query 486 GTGGTTT 492 ||||||| Sbjct 120 GTGGTTT 126 >seq10491 Length=127 Score = 111 bits (122), Expect = 5e-22 Identities = 86/101 (85%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||||| | |||||| ||||||||||| |||||||||||| || |||| || ||||| || Sbjct 1 AGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGC 60 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||| ||| |||||||||||||||||||||| |||||| Sbjct 61 ATTAACT-GGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 100 >seq6471 Length=127 Score = 111 bits (122), Expect = 5e-22 Identities = 87/103 (84%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 ||||||| | |||||| ||||||||||| |||||||||||| || |||| || ||||| | Sbjct 4 GAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTC 63 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||| ||| |||||||||||||||||||||| |||||| Sbjct 64 ACATTGACT-GGGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 105 >seq4452 Length=127 Score = 107 bits (118), Expect = 6e-21 Identities = 100/125 (80%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 364 TCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG 421 || ||||||| |||||| | |||||||| | ||||||| | |||||| |||||||| Sbjct 4 TCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAG 63 Query 422 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC 481 || |||||||||||| || |||| || ||||| || | | ||| ||| ||||||||||| Sbjct 64 TAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGC 122 Query 482 GTAGG 486 ||||| Sbjct 123 GTAGG 127 >seq11178 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||| Sbjct 127 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT- 69 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| ||||||||||||||||||||| |||||| Sbjct 68 GGGTATAAAGGGTGCGTAGGTGGTTTATTAAGT 36 >seq1242 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||| Sbjct 124 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT- 66 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | |||||||||||||||||||||| |||||| Sbjct 65 GTGTGTAAAGGGTGCGTAGGTGGTTTATTAAGT 33 >seq9630 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 95/120 (79%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 364 TCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG 421 || ||||||| |||||| | |||||||| | ||||||| | |||||| ||| |||| Sbjct 119 TCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAACTTCGTACCAG 60 Query 422 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC 481 ||| |||||||||||| || |||| || ||||| || | | ||| ||| ||||||||||| Sbjct 59 CAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGC 1 >seq3597 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 94/118 (80%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 353 GTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTA 409 ||||| ||| | || ||||||| |||||| | |||||||| | ||||||||| ||| Sbjct 118 GTAAAACTCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCCGACTA 59 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||| ||||||||||| |||||||||||| || |||| || ||||| || | | ||||| Sbjct 58 ACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGG 1 >seq5298 Length=127 Score = 95.1 bits (104), Expect = 4e-17 Identities = 100/128 (78%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 354 TAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAA 410 |||| ||| | || ||||||| |||||| | |||||||| | ||||||| | |||| Sbjct 1 TAAAACTCGTTTCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAA 60 Query 411 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGC 470 || |||||||||| |||||||||||| || |||| || ||||| || | | ||| ||| Sbjct 61 CTTTGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGT 119 Query 471 GTAAAGGG 478 |||||||| Sbjct 120 GTAAAGGG 127 >seq4857 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 414 CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTA 473 ||||||||||| |||||||||||| || |||| || ||||| || | | ||| ||| ||| Sbjct 1 CGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTA 59 Query 474 AAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| |||||||||||||| |||||| Sbjct 60 AAGGATGCGTAGGTGGTTTATTAAGT 85 >seq488 Length=114 Score = 93.3 bits (102), Expect = 1e-16 Identities = 91/115 (79%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 369 AAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426 ||||| |||||| | |||||||| | ||||||| | |||||| ||||||||||| | Sbjct 1 AAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTC 60 Query 427 GCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC 481 ||| ||||||| || |||| || ||||| || | | ||| ||| ||||||||||| Sbjct 61 GCGATAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGC 114 >seq1569 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||| |||||||||||| || |||| || ||||| || | | ||| ||| |||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAA 59 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| ||||||||||||| |||||| Sbjct 60 AGGGAGCGTAGGTGGTTTATTAAGT 84 >seq1568 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||| |||||||||||| || |||| || ||||| || | | ||| ||| |||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAA 59 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| ||||||||||||| |||||| Sbjct 60 AGGGGGCGTAGGTGGTTTATTAAGT 84 >seq504 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||| |||||||||||| || |||| || ||||| || | | ||| ||| |||| Sbjct 127 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAA 69 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| ||||||||||||| |||||| Sbjct 68 AGGGCGCGTAGGTGGTTTATTAAGT 44 >seq8476 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 417 GCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAG 476 |||||||| |||||||||||| || |||| || ||||| || | | ||| ||| |||||| Sbjct 127 GCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACT-GGGTGTAAAG 69 Query 477 GGTGCGTAGGTGGTTTCTTAAGT 499 |||| ||||||||||| |||||| Sbjct 68 GGTGTGTAGGTGGTTTATTAAGT 46 >seq4675 Length=127 Score = 84.2 bits (92), Expect = 7e-14 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 353 GTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTA 409 ||||| ||| | || ||||||| |||||| | |||||| | | ||||||| | ||| Sbjct 23 GTAAAACTCGTTTCGTCAAGGATTATAATGCAATCGTACTTAAAGGAGAAGCCCTGACTA 82 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 ||| ||||||||||| |||||||||||| || |||| || ||||| Sbjct 83 ACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCAAGTGTTAT 127 >seq14608 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 77/96 (80%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 353 GTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTA 409 ||||| ||| | || ||||||| |||||| | |||||||| | ||||||| | ||| Sbjct 98 GTAAAACTCGTTTCGTCAAGGATTATAATGCAATTGTACTTGAAGGAGAAGCCCTGACTA 39 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 ||| ||||||||||| |||||||||||| || |||| Sbjct 38 ACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 3 >seq11690 Length=97 Score = 80.6 bits (88), Expect = 8e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| |||||||||| | || ||| Sbjct 85 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATATGGAGAGGG 26 Query 445 CTAGCGTTATCCGGAATTACTGGG 468 | || ||||| || | | |||||| Sbjct 25 CAAGTGTTATTCGCATTGACTGGG 2 >seq6241 Length=108 Score = 80.6 bits (88), Expect = 8e-13 Identities = 76/96 (79%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 364 TCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG 421 || ||||||| |||||| | |||||||| | ||||||| | |||||| ||||| || Sbjct 102 TCGTCAAGGATTATAATGCAATCGTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCTAG 43 Query 422 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||| |||||||||||| || |||| || ||||| || Sbjct 42 CAGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCG 7 >seq11679 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 75/94 (80%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 353 GTAAAGCTC-TGTCCTCAAGGAAGATAATGACG--GTACTTGAGGAGGAAGCCCCGGCTA 409 ||||| ||| | || ||||||| ||||||| |||||||| | ||||||| | ||| Sbjct 94 GTAAAACTCGTTTCGTCAAGGATTATAATGAAATCGTACTTGAAGGAGAAGCCCTGACTA 35 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 ||| ||||||||||| |||||||||||| || || Sbjct 34 ACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGG 1 >seq5071 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 423 AGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCG 482 || |||||||||||| || |||| || ||||| || | | |||||| |||||||||||| Sbjct 1 AGTCGCGGTAATACGGAGAGGGCAAGTGTTATTCGCATTGACTGGGT-GTAAAGGGTGCG 59 Query 483 TAGGTGGTTTCTTAAGT 499 |||| ||||| |||||| Sbjct 60 TAGGGGGTTTATTAAGT 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497239108352