Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq22879 479 9e-133 >seq22879 Length=6356 Score = 479 bits (530), Expect = 9e-133 Identities = 286/300 (95%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 4759 CGCCTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCT 4700 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4699 CAACAGGGTCTTCTTTCCCCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 4640 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4639 TGGGTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 4580 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4579 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 4520 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4519 TGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 4460 Score = 143 bits (158), Expect = 9e-32 Identities = 100/114 (88%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 5084 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 5025 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 5024 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCGACC 4971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634805949504