Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq22775 300 5e-79 seq19662 300 5e-79 seq19661 300 5e-79 seq19660 300 5e-79 seq22889 159 1e-36 seq22596 156 1e-35 seq19516 156 1e-35 seq9668 154 4e-35 seq9372 86.0 2e-14 seq9371 86.0 2e-14 seq22654 84.2 7e-14 seq6383 84.2 7e-14 >seq22775 Length=2291 Score = 300 bits (332), Expect = 5e-79 Identities = 276/345 (80%), Gaps = 23/345 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 ||||||||||| ||| | || ||| | || || | ||| ||||||| |||||||| Sbjct 1895 GTACTCATTCCGATTGCGAGGCCCTTGTCGGGCGCCCGCATCGTTATTTATCGTCACTAC 1954 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1955 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 2014 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 | ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 2015 TCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACGACCATGG 2074 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 2075 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGC 2134 Query 239 CTC-------AAGGCCATGCGATTCGTT------AAGTTATTATGAATCACCAAGG---- 281 | | || |||| ||| || | ||||| ||||||||||| || Sbjct 2135 CCCCGGTGAGGGGGGCATGTGATGCGATCCGAAAGAGTTACTATGAATCACC--GGCCTA 2192 Query 282 AGCCCCGAAGGGCGT--TGGTTTTTTATCTAATAAATACACCCCT 324 || | | |||| |||||||| | |||||||||||| |||| Sbjct 2193 TGCTTTGGTGTGCGTGCTGGTTTTTAACCTAATAAATACATCCCT 2237 >seq19662 Length=13625 Score = 300 bits (332), Expect = 5e-79 Identities = 276/345 (80%), Gaps = 23/345 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 ||||||||||| ||| | || ||| | || || | ||| ||||||| |||||||| Sbjct 395 GTACTCATTCCGATTGCGAGGCCCTTGTCGGGCGCCCGCATCGTTATTTATCGTCACTAC 454 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 455 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 514 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 | ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 515 TCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACGACCATGG 574 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 575 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGC 634 Query 239 CTC-------AAGGCCATGCGATTCGTT------AAGTTATTATGAATCACCAAGG---- 281 | | || |||| ||| || | ||||| ||||||||||| || Sbjct 635 CCCCGGTGAGGGGGGCATGTGATGCGATCCGAAAGAGTTACTATGAATCACC--GGCCTA 692 Query 282 AGCCCCGAAGGGCGT--TGGTTTTTTATCTAATAAATACACCCCT 324 || | | |||| |||||||| | |||||||||||| |||| Sbjct 693 TGCTTTGGTGTGCGTGCTGGTTTTTAACCTAATAAATACATCCCT 737 >seq19661 Length=47004 Score = 300 bits (332), Expect = 5e-79 Identities = 276/345 (80%), Gaps = 23/345 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 ||||||||||| ||| | || ||| | || || | ||| ||||||| |||||||| Sbjct 395 GTACTCATTCCGATTGCGAGGCCCTTGTCGGGCGCCCGCATCGTTATTTATCGTCACTAC 454 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 455 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 514 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 | ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 515 TCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACGACCATGG 574 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 575 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGC 634 Query 239 CTC-------AAGGCCATGCGATTCGTT------AAGTTATTATGAATCACCAAGG---- 281 | | || |||| ||| || | ||||| ||||||||||| || Sbjct 635 CCCCGGTGAGGGGGGCATGTGATGCGATCCGAAAGAGTTACTATGAATCACC--GGCCTA 692 Query 282 AGCCCCGAAGGGCGT--TGGTTTTTTATCTAATAAATACACCCCT 324 || | | |||| |||||||| | |||||||||||| |||| Sbjct 693 TGCTTTGGTGTGCGTGCTGGTTTTTAACCTAATAAATACATCCCT 737 >seq19660 Length=51510 Score = 300 bits (332), Expect = 5e-79 Identities = 276/345 (80%), Gaps = 23/345 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 ||||||||||| ||| | || ||| | || || | ||| ||||||| |||||||| Sbjct 395 GTACTCATTCCGATTGCGAGGCCCTTGTCGGGCGCCCGCATCGTTATTTATCGTCACTAC 454 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 455 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 514 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 | ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 515 TCTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACGACCATGG 574 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 575 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGC 634 Query 239 CTC-------AAGGCCATGCGATTCGTT------AAGTTATTATGAATCACCAAGG---- 281 | | || |||| ||| || | ||||| ||||||||||| || Sbjct 635 CCCCGGTGAGGGGGGCATGTGATGCGATCCGAAAGAGTTACTATGAATCACC--GGCCTA 692 Query 282 AGCCCCGAAGGGCGT--TGGTTTTTTATCTAATAAATACACCCCT 324 || | | |||| |||||||| | |||||||||||| |||| Sbjct 693 TGCTTTGGTGTGCGTGCTGGTTTTTAACCTAATAAATACATCCCT 737 >seq22889 Length=56134 Score = 159 bits (176), Expect = 1e-36 Identities = 146/191 (76%), Gaps = 30/191 (16%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT-------------- 389 ||||||||||||||||||||||||||||||||||| |||| || Sbjct 56111 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGAGTGGGTCGTCGGTCCGTTG 56052 Query 390 ---------------ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 || ||||||||||| ||||||||||||||||||||| |||||| | Sbjct 56051 CCGGCCCGACGTGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCT 55992 Query 435 CACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 | | ||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 55991 CGCCGTATAAACAAGCTTATACTTGGACATGCATGGCTTAATCTTTGAGACAAGCATATG 55932 Query 494 ACTACTGGCAG 504 ||||||||||| Sbjct 55931 ACTACTGGCAG 55921 >seq22596 Length=38936 Score = 156 bits (172), Expect = 1e-35 Identities = 105/116 (91%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-G 448 || ||||||||||| ||||||||||||||||||||| |||||| || | ||||| | | Sbjct 38805 ACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAG 38746 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38745 CTTATACTTGGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 38690 >seq19516 Length=19532 Score = 156 bits (172), Expect = 1e-35 Identities = 105/116 (91%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-G 448 || ||||||||||| ||||||||||||||||||||| |||||| || | ||||| | | Sbjct 113 ACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAG 172 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 CTTATACTTGGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 228 >seq9668 Length=126 Score = 154 bits (170), Expect = 4e-35 Identities = 101/110 (92%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATA 454 |||||||| ||||||||||||||||||||| |||||| || | ||||| | ||||||| Sbjct 126 AAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATA 67 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 17 >seq9372 Length=64 Score = 86.0 bits (94), Expect = 2e-14 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 47 >seq9371 Length=64 Score = 86.0 bits (94), Expect = 2e-14 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 47 >seq22654 Length=2909 Score = 84.2 bits (92), Expect = 7e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2909 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2864 >seq6383 Length=64 Score = 84.2 bits (92), Expect = 7e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510036023808