Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq291 178 2e-42 seq1610 163 4e-38 seq242 163 4e-38 seq160 158 2e-36 seq553 138 2e-30 >seq291 Length=3003 Score = 178 bits (196), Expect = 2e-42 Identities = 191/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 2451 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 2393 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| | || | ||| ||||| || |||| | Sbjct 2392 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 2333 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || ||| |||||| || ||| | ||||||||||||||||||| ||||| ||||| Sbjct 2332 GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCC 2273 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||||| Sbjct 2272 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCACCTGTGTC 2213 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 2212 GGTTTGGGGTA 2202 >seq1610 Length=2511 Score = 163 bits (180), Expect = 4e-38 Identities = 183/241 (76%), Gaps = 13/241 (5%) Strand=Plus/Plus Query 9 TCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGT 68 |||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| | ||||| Sbjct 1689 TCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAGAGCCCTGT 1747 Query 69 GTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT-C 127 |||||| ||||||||||||| ||| || ||| ||| ||| ||| | || | | Sbjct 1748 GTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCAC-------ATACTTGC 1800 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || || | ||| | |||| ||||||||||| | || |||||||| |||||| Sbjct 1801 GTACATAAGG---GTCACGC-TTCTTCCGAAGTTACGCGTGCAATTTGCCGAGTTCCTTC 1856 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 | | |||||| | | | |||||| |||||||||||| | ||||| ||||||||||| ||| Sbjct 1857 AACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCAGTGTCGGTTTAGGGT 1916 Query 248 A 248 | Sbjct 1917 A 1917 >seq242 Length=118535 Score = 163 bits (180), Expect = 4e-38 Identities = 192/254 (76%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| |||||||||||||||| || ||||| ||||||| | ||||| ||| Sbjct 113975 CTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTC-GTCTTTGCAG 114033 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCA-GCTC 119 | ||||||||||| ||||||||||| || | ||||||||||||| ||| || ||| Sbjct 114034 AGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGATTCTCTGCGACC-CCATCATGCTA 114092 Query 120 AACACGTCG----TTCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 | | || | ||||| | | | || | ||||||||||||||||||| || ||| Sbjct 114093 AGCGCGCAGGCGCTTCACACTACCGGGGTATACCTTCTCCCGAAGTTACGGTATCAATTT 114152 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| |||||| || ||||| | | | |||||| | || || || | |||||||| Sbjct 114153 GCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTGGAATATTCATCCCGTCCACCTGT 114212 Query 235 GTCGGTTTACGGTA 248 |||||||| ||||| Sbjct 114213 GTCGGTTTGCGGTA 114226 >seq160 Length=64135 Score = 158 bits (174), Expect = 2e-36 Identities = 186/250 (74%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 4291 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 4233 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||| ||||||||||| | || | |||||| || | ||||| | Sbjct 4232 GTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTTCTGCGGCCCTCTTCAGCTATA 4173 Query 122 ---CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | | | ||||| | ||| | ||||||||||||||||||| ||||| ||||| Sbjct 4172 GCTCGCATGAGCCACCAAAAAGGGCGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCCT 4113 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| ||| ||||| | | | ||||| || |||||| ||| |||||||||||| Sbjct 4112 AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCCACCTGTGTCG 4053 Query 239 GTTTACGGTA 248 |||||||||| Sbjct 4052 GTTTACGGTA 4043 >seq553 Length=5624 Score = 138 bits (152), Expect = 2e-30 Identities = 180/248 (73%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||| | | || ||| Sbjct 4247 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCATCTTTCGATTTT-GCAA 4189 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| ||||||||||| | || ||| ||||| ||| | Sbjct 4188 AGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGCG----------GCTGA 4139 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | |||||| ||||||||||||||||||| ||||||||||||||| Sbjct 4138 TA---TTGCT-ACCAGCG------CCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAG 4089 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| ||||| ||| | |||||| ||||||| || | |||||||||||| Sbjct 4088 TTCCTTAGCCATGATTCACTCGAGCACCTTAGAATTCTCTTCCCGGATACCTGTGTCGGT 4029 Query 241 TTACGGTA 248 || ||||| Sbjct 4028 TTGCGGTA 4021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694330530271