Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq291 246 3e-63 seq160 179 4e-43 seq242 158 1e-36 seq1610 89.7 5e-16 seq553 82.4 7e-14 >seq291 Length=3003 Score = 246 bits (272), Expect = 3e-63 Identities = 138/139 (99%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2319 GAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 2378 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2379 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 2438 Query 140 GCCGGAAGGTTAATTGATG 158 ||||||||||||||||||| Sbjct 2439 GCCGGAAGGTTAATTGATG 2457 >seq160 Length=64135 Score = 179 bits (198), Expect = 4e-43 Identities = 107/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 || || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 4186 GGCCGCAGAAACCAGGCCGCTGCGACTGTTTATCAAAAACACAGCACTCTGCAAACACGA 4245 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4246 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCTGGAAGGTTAATTGATG 4297 >seq242 Length=118535 Score = 158 bits (174), Expect = 1e-36 Identities = 102/112 (91%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| ||| | || ||||||||||||||||||||||||||||||||||||| |||| Sbjct 114081 GGTCGCAGAGAATCGGTGGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAAGACGA 114022 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 114021 AAGTCGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAAGTGATG 113970 >seq1610 Length=2511 Score = 89.7 bits (98), Expect = 5e-16 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 1777 ACCAGGGGGTAGCGACTGTTTACCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 1718 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGA 145 ||||||| ||||||||||||||||| ||| Sbjct 1717 ATAGGGTCTGACGCCTGCCCGGTGCTGGA 1689 >seq553 Length=5624 Score = 82.4 bits (90), Expect = 7e-14 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| ||||||||| || |||||| |||||| || ||||| Sbjct 4154 AGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCAAAATCGAAAGATGAAGTATA 4213 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||| |||||||||||| |||||||||| Sbjct 4214 AGGCCTGACACCTGCCCGGTGCTGGAAGGTTAA 4246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476752299587