Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq291 751 0.0 seq160 554 1e-155 seq242 462 5e-128 seq553 284 3e-74 seq1610 131 4e-28 seq4 96.9 9e-18 >seq291 Length=3003 Score = 751 bits (832), Expect = 0.0 Identities = 422/426 (99%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2645 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 2586 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2585 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2526 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2525 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 2466 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2465 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 2406 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2405 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 2346 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2345 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 2286 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2285 GTGCCATGTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 2226 Query 421 AACCAC 426 |||||| Sbjct 2225 AACCAC 2220 >seq160 Length=64135 Score = 554 bits (614), Expect = 1e-155 Identities = 378/422 (90%), Gaps = 5/422 (1%) Strand=Plus/Minus Query 8 ACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA 67 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4480 ACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTG 4421 Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4420 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 4361 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAA 185 |||||| |||||||||||||||||| ||||||||||||||||||||||| || ||| | Sbjct 4360 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGA 4301 Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4300 CCCCATCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 4241 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305 ||||||||||||||||||||| ||||||||||||||||||||||| ||| || || | | Sbjct 4240 TTTGCAGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTTCTGCGGCCCTCTT 4181 Query 306 GAGCT-TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 |||| || ||| | | |||| | |||||||||||||||||||||||||||| Sbjct 4180 CAGCTATAGCTCGCATGAGC--CACCAAAAAGGGCGCACCTTCTCCCGAAGTTACGGTGC 4123 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424 | | ||||||||||||||| ||||||||||||||||||||| | |||||| || | || Sbjct 4122 CATGTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCC 4063 Query 425 AC 426 || Sbjct 4062 AC 4061 >seq242 Length=118535 Score = 462 bits (512), Expect = 5e-128 Identities = 354/414 (86%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||| ||||| | ||||| ||| ||||||||| || |||||||| Sbjct 113791 CGCGGGTAGATTGCATCATCACAAACACTTCAACTTCGCTGAGTCTCAGGAGGAGACAGT 113850 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113851 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 113910 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 113911 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT-GC---- 113965 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 113966 ----ACCCCATCACTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCGACTT 114021 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||| ||||||||||||||||||||||||||||||||||||| || | ||| ||||| Sbjct 114022 TCGTCTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGATTCTCTGCGACC 114081 Query 301 GGCATGA-GCTTACGGAGCAAGTCCTTCACCCTCACCGGCG--CACCTTCTCCCGAAGTT 357 ||| | ||| | | ||| | |||||| || ||||| | |||||||||||||||| Sbjct 114082 -CCATCATGCTAAGCGCGCAGGCGCTTCACACT-ACCGGGGTATACCTTCTCCCGAAGTT 114139 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411 ||||| | |||||| ||||||||| || ||||||||||||||||||||| || Sbjct 114140 ACGGTATCAATTTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTGGAAT 114193 >seq553 Length=5624 Score = 284 bits (314), Expect = 3e-74 Identities = 318/424 (75%), Gaps = 32/424 (8%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| ||| | || ||||||| | || ||||||||| ||| ||| || |||||||| Sbjct 4441 GCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGAG-CTCATGGCTGAGACAGC 4383 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4382 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4323 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||||||||||| | |||||| ||| Sbjct 4322 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAATGCTTCGGTTTA 4263 Query 181 --GCTAAC--CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCC 236 ||||| ||| || |||||||||| |||||||||||| |||| || ||||| || Sbjct 4262 ACCCTAACATCCCCTC--TTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCA 4205 Query 237 ACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 |||||| |||||| || ||||||||| ||||||||||| ||||| | || | Sbjct 4204 TCTTTCGATTTTGCAAAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGC 4145 Query 297 GACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGT 356 | | ||| || | ||| |||| |||||||||||||| Sbjct 4144 GGC-----TGATATTGC-------------------TACCAGCGCCCCTTCTCCCGAAGT 4109 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 ||| | ||| ||||||| |||||||| || ||| ||| ||| |||| | ||||||| Sbjct 4108 TACAGGGCCATTTTGCCGAGTTCCTTAGCCATGATTCACTCGAGCACCTTAGAATTCTCT 4049 Query 417 ACCC 420 ||| Sbjct 4048 TCCC 4045 >seq1610 Length=2511 Score = 131 bits (144), Expect = 4e-28 Identities = 161/219 (74%), Gaps = 16/219 (7%) Strand=Plus/Plus Query 202 TCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTG 261 ||| ||||||||||||||||| |||||||||||| ||| || || |||||| ||||| Sbjct 1689 TCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAGAGCCCTGTG 1748 Query 262 TTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAG 321 ||||| ||||||||||| | |||||| | | | ||| || ||| | | Sbjct 1749 TTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACATACTTGC-------G 1801 Query 322 TCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG-GTGCCTTTTTGCCTAGTTCC 380 | | | | |||| ||||| ||||||||||| ||| | |||||| |||||| Sbjct 1802 TACATAAGGGTCAC-------GCTTCTTCCGAAGTTACGCGTG-CAATTTGCCGAGTTCC 1853 Query 381 TTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||| | ||||||||||||||||||||||||||||||| Sbjct 1854 TTCAACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 1892 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | ||||| Sbjct 1491 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTT 1550 Query 73 ACGCCATTCGT 83 ||||||||||| Sbjct 1551 ACGCCATTCGT 1561 >seq4 Length=49023 Score = 96.9 bits (106), Expect = 9e-18 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||| |||| ||||||||| | | ||||| Sbjct 35816 GCATCTTCACGGAAAATTCAACTTCATTGAGGTATTATTGGAGACAGTGGAGAGGTCGTT 35757 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 || |||||| ||| |||| || |||| |||||||||||||||||||||||||||||| Sbjct 35756 ACACCATTCATGCGCGTCGAAAATTACTCGACAAGGAATTTCGCTACCTTAGGACCGT 35699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260669797184