Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq553 385 1e-104 seq160 279 1e-72 seq291 264 2e-68 seq242 228 2e-57 seq1610 123 5e-26 seq4 102 2e-19 >seq553 Length=5624 Score = 385 bits (426), Expect = 1e-104 Identities = 301/356 (85%), Gaps = 5/356 (1%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 |||||||| |||||||||||| |||||||||||||| || | |||||||| ||||| Sbjct 4436 TACCCGGCGTCTTCACCGGGACCACAATTTCACCGAGCTCATGGCTGAGACAGCGCCCAG 4377 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4376 ATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 4317 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT--GCTCTA 178 |||||||||||||||||||||||||||||||||| |||| ||||||| || | ||| Sbjct 4316 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAATGCTTCGGTTTAACCCTA 4257 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 ||| || |||||||||||||||||||||||| ||||| | ||||| || |||| ||| Sbjct 4256 ACATCCCCTCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCATCTTTCGA 4197 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 || ||| | | |||||||||| ||||||||||| ||||||| ||| |||||| ||| Sbjct 4196 TTTTGCAAAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGCGG-CTGAT 4138 Query 299 ATAG--ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || | || || ||||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 4137 ATTGCTACCAGCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTA 4082 >seq160 Length=64135 Score = 279 bits (308), Expect = 1e-72 Identities = 292/384 (76%), Gaps = 26/384 (7%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | |||| ||||||||| |||||| || ||||||| ||| ||||| Sbjct 4475 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTGTCGTT 4416 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4415 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4356 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAGAT 184 |||||||||||||||||||||||||||| | | |||||| |||| || || Sbjct 4355 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGACCCCA 4296 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | |||||||||||||||||||||||||||| ||||||| || ||| || || || Sbjct 4295 TCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 4236 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC----------- 293 ||| ||||||||||| ||||||||||| ||||| | |||||||| Sbjct 4235 AGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTTCTGCGGCCCTCTTCAGCT 4176 Query 294 ----CTGTCAT-AGACA--------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTG 340 || ||| || || ||| | ||||||||| ||||||||| | ||| ||| Sbjct 4175 ATAGCTCGCATGAGCCACCAAAAAGGGCGCACCTTCTCCCGAAGTTACGGTGCCATGTTG 4116 Query 341 CCGAGTTCCTTAACAATAGTTCTC 364 || |||||||| || ||||||| Sbjct 4115 CCTAGTTCCTTCACCCGAGTTCTC 4092 >seq291 Length=3003 Score = 264 bits (292), Expect = 2e-68 Identities = 290/390 (74%), Gaps = 27/390 (7%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| ||| Sbjct 2639 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 2580 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2579 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 2520 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | | |||||| | ||||| Sbjct 2519 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 2460 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||| ||||||||||||||||| ||||||| || ||| || | Sbjct 2459 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 2400 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | ||||| |||||||||| ||||||||||| ||||| | ||| || || | ||| Sbjct 2399 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCAT 2341 Query 301 -AG-------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 || || ||| | ||||||||| ||||||||| | | Sbjct 2340 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 2281 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || ||||| |||||||| || ||||||| Sbjct 2280 ATGTTGCCTAGTTCCTTCACCCGAGTTCTC 2251 >seq242 Length=118535 Score = 228 bits (252), Expect = 2e-57 Identities = 283/384 (74%), Gaps = 35/384 (9%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| | | ||| ||| | |||||| | ||||||||| |||||| Sbjct 113803 GCATCATCACAAACACTTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTT 113862 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113863 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 113922 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||| ||||||| | ||| | |||| | | || | Sbjct 113923 TAGTTACGGCCGCCGTTTACCGGGGCTT-CGATCA----AGAGCTTGC---ACCCCAT-C 113973 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 ||||||||||| ||||||||||||||||| ||||||| ||| ||| || ||| |||| Sbjct 113974 ACTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTCGTCTTTGCAG 114033 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCTGTCAT----A 301 | |||||||||| ||||||||||| || |||||||||| || |||| | Sbjct 114034 AGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGATTCTCTGCGACCCCATCATGCTAA 114093 Query 302 G---ACAGGC----------ACC--------CCTTCTCCCTAAGTTACGGGGTCATTTTG 340 | ||||| ||| ||||||||| ||||||||| ||| |||| Sbjct 114094 GCGCGCAGGCGCTTCACACTACCGGGGTATACCTTCTCCCGAAGTTACGGTATCAATTTG 114153 Query 341 CCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||| | ||||||| Sbjct 114154 CCGAGTTCCTTCTCCTGAGTTCTC 114177 >seq1610 Length=2511 Score = 123 bits (136), Expect = 5e-26 Identities = 136/180 (76%), Gaps = 11/180 (6%) Strand=Plus/Plus Query 196 TCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTG 255 |||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||| Sbjct 1689 TCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAGAGCCCTGTG 1748 Query 256 TTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG-CGGCCTGTCATA------GACA--- 305 ||||||||||||||||||| ||| ||| || | ||| |||| ||| Sbjct 1749 TTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACATACTTGCGTACATAA 1808 Query 306 -GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || | ||||| || |||||||| | || ||||||||||||||| | ||||||| Sbjct 1809 GGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAGTTCCTTCAACGCAGTTCTC 1868 >seq4 Length=49023 Score = 102 bits (112), Expect = 2e-19 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 |||||||||| | || | | || ||||| ||||||||||| ||||||||||| | Sbjct 34280 CCTATACATCATATTACTATTTTGCAGAGCCCTGTGTTTTTATTAAACAGTCGCCACTCC 34221 Query 280 CTATTCTCTGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339 ||||| ||| ||||| || || ||||| | ||||||| ||||||| | |||| ||| Sbjct 34220 CTATTTTCTATGGCCTTCAATTGA--GGCACTCTTTCTCCCGAAGTTACAGAGTCAATTT 34163 Query 340 GCCGAGTTCCTT-AACAATA 358 |||||||||||| || |||| Sbjct 34162 GCCGAGTTCCTTCAATAATA 34143 Score = 100 bits (110), Expect = 6e-19 Identities = 95/119 (80%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAAATCGT 65 |||||||||| | | | ||| |||| ||| |||| ||| |||||||| | |||| Sbjct 35816 GCATCTTCACGGAAAATTCAACTTCATTGAGG-TATTATTGGAGACAGTGGAGAGGTCGT 35758 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||| || ||| |||| |||| || |||| |||||||||||||||||||||||||||||| Sbjct 35757 TACACCATTCATGCGCGTCGAAAATTACTCGACAAGGAATTTCGCTACCTTAGGACCGT 35699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062290285952