Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq21 309 5e-82 seq4540 96.9 6e-18 seq242 75.2 2e-11 seq160 73.4 7e-11 >seq21 Length=10696 Score = 309 bits (342), Expect = 5e-82 Identities = 217/246 (88%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||| Sbjct 2576 CAGGAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAG 2635 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||||||||||||||| ||| ||||| |||||||| |||||| |||||||||||||| Sbjct 2636 AGGGTGAACAATCCAACACTTTGCGAATGCTGCTTCGCAATGATAAGAAGAGCCGACATC 2695 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 2696 GAAGGATCAAAAAGCAACGTCGCTATGAGCGCTTGGTTGCCACAAGCCAGTTATCCCTGT 2755 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 ||||||||||||| |||||||| || || | | |||||||||||||||||| Sbjct 2756 GGTAACTTTTCTGACACCTCTAAACT-TAAGACAAAAGTTTTAAAGGATCGATAGGCCAG 2814 Query 275 ACTTTC 280 |||||| Sbjct 2815 ACTTTC 2820 >seq4540 Length=755 Score = 96.9 bits (106), Expect = 6e-18 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 || |||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 63 CGACGCTATGAGCGCTTGGTTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 4 Query 232 CTC 234 ||| Sbjct 3 CTC 1 >seq242 Length=118535 Score = 75.2 bits (82), Expect = 2e-11 Identities = 126/181 (70%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| | |||||||||||||||| || ||| || ||||| Sbjct 113230 ACCAAACTGTCTCACGACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGC 113289 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | || ||| |||| | | || | | |||| || ||||||||||||| | || Sbjct 113290 CATACCCTTGGGACCGGCTACAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCA 113346 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | | ||||| ||||||| ||||| | | |||| |||||||| ||| |||| Sbjct 113347 AACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTT 113406 Query 224 T 224 | Sbjct 113407 T 113407 >seq160 Length=64135 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| || ||||| | || Sbjct 5042 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 4983 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| | | || | | ||| || ||||||||||||| | |||| | | Sbjct 4982 CTTGGGACCGACTACAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 4926 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 4925 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 4871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854311766112