Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq242 188 1e-45 seq160 181 2e-43 seq553 150 4e-34 seq291 141 2e-31 seq1610 111 3e-22 seq4 102 2e-19 >seq242 Length=118535 Score = 188 bits (208), Expect = 1e-45 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | |||||||||||||||||||||| |||||||||| |||||||||| Sbjct 113617 GGGACAGTGCATGGTGGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGTGTAACGGAGGA 113558 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| ||| || | || ||||| | ||| | ||||||| |||| ||| ||| Sbjct 113557 GTTCGAAGGTACGCTAGGTACGGTCGGAAATCGTGCTGATAGTGCAATGGCATAAGCGTG 113498 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| || || |||||| | |||| |||||| || | || |||||||| ||| Sbjct 113497 CTTGACTGTGAGACTGACAAGTCGAACAGGTGCGAAAGCAGGACATAGTGATCCGGTGGT 113438 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 113437 TCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 113389 >seq160 Length=64135 Score = 181 bits (200), Expect = 2e-43 Identities = 180/231 (78%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||| |||| | ||| |||||||||||||||||| ||||| ||||||||||||||| Sbjct 4661 GGGACCGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGA 4720 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC--AGTGCAAAGGCAAAAGGG 228 || | ||| ||| |||||| || ||| | | |||||| ||||||||||| ||| | Sbjct 4721 GCTCGAAGGTACGCTCAGCGCGGTCGGACATC--GCGCACTGTGTGCAAAGGCATAAGCG 4778 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||||| | | | | || |||||| | |||| | || |||| |||||||| | Sbjct 4779 TGCTTGACTGCAAGATCGACGGATCAAGCAGGTAGGAAACTAGGACTTAGTGATCCGGTG 4838 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 4839 GTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 4889 >seq553 Length=5624 Score = 150 bits (166), Expect = 4e-34 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| ||||||||||||| |||||||||| ||| ||||||||||| Sbjct 4608 GGACATTGTTTGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCT 4667 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| || |||| | ||| |||| | | ||||||| ||| ||| || Sbjct 4668 TTCAAAGGTAAGCTCAATACGCTTGGTAACCGTATGAGGAGTGCAATAGCATAAGCTTGC 4727 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || | |||| | ||||||| |||||| ||| || |||||||| ||| Sbjct 4728 TTGACTGTGAGGCAGACAAGCCGAGCAGGGTCGAAAGACGGATATAGTGATCCGGTGGTT 4787 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| | ||||||||| ||| ||||||||| Sbjct 4788 CTGCATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACGCTGGGGATA 4835 >seq291 Length=3003 Score = 141 bits (156), Expect = 2e-31 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 2820 GGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 2879 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| | | ||||| || ||||| | || | ||| ||||||||||| | | Sbjct 2880 TACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGC 2939 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| || || ||| |||||| |||||||| || |||| |||||||| ||| Sbjct 2940 TTGACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 2999 Query 292 CTG 294 ||| Sbjct 3000 CTG 3002 >seq1610 Length=2511 Score = 111 bits (122), Expect = 3e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||| |||| ||| | ||||||||| || |||||| ||||| |||||||||| Sbjct 1185 AGTGCAATGGCATAAGCCCGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGTC 1126 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || | || |||||||| ||| | | ||||| |||| |||||| ||||||||||| ||| Sbjct 1125 GGTCATAGTGATCCGGTGGTCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACG 1066 Query 331 CTGGGGATA 339 | ||||||| Sbjct 1065 CCGGGGATA 1057 >seq4 Length=49023 Score = 102 bits (112), Expect = 2e-19 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || ||||||||||||| ||| ||||| ||||||||||||||| | | |||| || || Sbjct 36012 GGTAGTTTGACTGGGGTGGTGTCCTCCGAAAGAGTAACGGAGGAGTCTAAAGGTAAACTT 36071 Query 187 AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 | ||| | | | | | |||| || |||||||| || ||||||| | | Sbjct 36072 AACTTAACTAATGTTTAGGTGTAAAGTGTAATGGCAAAAGTTTGCTTGACTGAAAGATAT 36131 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCC 306 ||| || | ||| ||||||||||| || || ||||||| | ||| ||||| || Sbjct 36132 ACAAATCAATCAGAGACGAAAGTCGAGCATAGTGATCCGATCATTCTGTGTGGAAAGGTG 36191 Query 307 GTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| ||||||||||| ||| || |||||| Sbjct 36192 ATCGCT-AACGGATAAAAGGTACGCTAGGGATA 36223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982298547552