Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq553 176 5e-42 seq291 138 1e-30 seq160 136 4e-30 seq242 127 2e-27 seq4 87.8 2e-15 >seq553 Length=5624 Score = 176 bits (194), Expect = 5e-42 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||||| | ||||||| |||| ||||||||| || |||||||||| || Sbjct 4460 GGGGTCTTTCCGTCCCGTTGCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGA 4401 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 ||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 4400 GCTCATGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCG 4341 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4340 ACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 4282 >seq291 Length=3003 Score = 138 bits (152), Expect = 1e-30 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||| || | |||||||||| | | | ||||||||||| Sbjct 2664 CGGGGTCTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTG 2605 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 2604 AG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 2546 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 2545 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 2514 >seq160 Length=64135 Score = 136 bits (150), Expect = 4e-30 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||| | | |||||||||| | | | ||||||||||| Sbjct 4506 CGGGGTCTTTCCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTG 4447 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 4446 AG-TCTCGGGTGGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 4388 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4387 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 4328 Query 202 C 202 | Sbjct 4327 C 4327 >seq242 Length=118535 Score = 127 bits (140), Expect = 2e-27 Identities = 118/151 (78%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||||| ||||| |||| | ||| ||| ||| |||| Sbjct 113773 GGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACACTTCAACTTCGCTGA 113832 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | |||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 113833 GTCTCA-GGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 113891 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 113892 GACAAGGAATTTCGCTACCTTAGGACCGTTA 113922 >seq4 Length=49023 Score = 87.8 bits (96), Expect = 2e-15 Identities = 105/147 (71%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || || || |||||||||| || | | ||| |||| |||| Sbjct 35845 GGGTCTTTCCGTCTAGCTGCTATTATTCCGCATCTTCACGGAAAATTCAACTTCATTGAG 35786 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||||||| |||||||||| ||| |||| || |||| ||| Sbjct 35785 GTATTATTGGAGACAGTGGAGAGGTCGTTACACCATTCATGCGCGTCGAAAATTACTCGA 35726 Query 145 CAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||| Sbjct 35725 CAAGGAATTTCGCTACCTTAGGACCGT 35699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547145256573