Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq552 637 1e-180 seq160 441 2e-121 seq242 363 3e-98 seq553 172 1e-40 seq2145 170 4e-40 seq4 134 3e-29 >seq552 Length=1692 Score = 637 bits (706), Expect = 1e-180 Identities = 363/367 (99%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1024 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 1081 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 1141 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1142 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCA 1201 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 1261 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1262 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGGACGTTATCCCCCACTACCAG 1321 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 1381 Query 361 CCGCTCG 367 ||||||| Sbjct 1382 CCGCTCG 1388 >seq160 Length=64135 Score = 441 bits (488), Expect = 2e-121 Identities = 301/336 (90%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| ||||||| || ||||||||||||||| ||||| Sbjct 811 CTTTACAACCCGAAGGCCTTCTT-CACCCACGCGGTAT-GGCTGGATCAGGCTTGCGCCC 754 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 694 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| | Sbjct 693 TGTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCG 634 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| Sbjct 633 CCAACTAGCTAATCCGACATCGGCTCATCTATCCGCGCAAGGCCCGAAGGTCCCCTGCTT 574 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||| ||| |||||||||||||||||| |||||| |||||||||||||| | || Sbjct 573 TCACCCGAAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAAG 514 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | ||||||| | | ||| |||||||||||||| ||| Sbjct 513 GTAGATTCCGATGTATTCCTCACCCGTCCGCCACTC 478 >seq242 Length=118535 Score = 363 bits (402), Expect = 3e-98 Identities = 286/337 (85%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||| | | ||||||||| || |||||||||||| |||| ||| Sbjct 117569 CTTTACAACCCGAAGGCCTTCAT-CGCACACGCGGGAT-GGCTGGATCAGGGTTTCCCCC 117626 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 117627 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 117686 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| || |||||||| ||||| |||||||||||||||||||||||| ||||| || Sbjct 117687 TGTGGCTGGTCGTCCTCTCAAACCAGCTACGGATCGTCGCCTTGGTGAGCCGTTACCCCA 117746 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||||||| | ||| ||| |||| |||||| | | |||||||||| Sbjct 117747 CCAACTAGCTAATCCGATATCGGCCGCTCTAATAGTGCAAGGTCTTGCGATCCCCTGCTT 117806 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTC-CGAACGTTATCCCCCACTACCA 299 || |||||||| |||||||||||||||| | |||| || | |||||||||| |||| | Sbjct 117807 TCCCCCGTAGGGCGTATGCGGTATTAGCTACGCTTTCGCGTA-GTTATCCCCCGCTACTA 117865 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 |||| |||| | |||||||||||||| |||| ||| Sbjct 117866 GGCACGTTCCGATACATTACTCACCCGTTCGCCACTC 117902 >seq553 Length=5624 Score = 172 bits (190), Expect = 1e-40 Identities = 138/165 (84%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||| || | |||||| |||||||||| ||||||||||| Sbjct 718 CACGCGGCAT-GGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTC 660 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| | ||||||||||||| | | Sbjct 659 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCT 600 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | ||||||||||||||| ||| ||||| | ||||||||||||| Sbjct 599 AGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAAT 555 >seq2145 Length=12713 Score = 170 bits (188), Expect = 4e-40 Identities = 176/232 (76%), Gaps = 14/232 (6%) Strand=Plus/Minus Query 105 CGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTG 164 ||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||||| Sbjct 12318 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTG 12259 Query 165 GTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCC 224 || ||| ||||| ||||||||||||||||| || |||||||| || || Sbjct 12258 GTAGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATC--------CATCTCC 12207 Query 225 CGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGT 284 | | |||||||||| ||||||||| |||||||||| ||||||| ||| Sbjct 12206 GATAAAT------CTTTCTCCCGAAGGACGTATACGGTATTAGCACACGTTTCCATGCGT 12153 Query 285 TATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 ||| || | || ||||||| | || ||||||||||||| ||||||| Sbjct 12152 TATTCCGTAGAGATGGGTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 12101 >seq4 Length=49023 Score = 134 bits (148), Expect = 3e-29 Identities = 130/165 (79%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||| |||| ||| ||||||||||||||||||||||||||| | | |||| | Sbjct 22999 GCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTGCC--CATTTTGAGT-T 22943 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 |||| | | ||| ||||| |||| |||||||||||| ||||||| |||| ||| ||| Sbjct 22942 GGACTATATTTCAATTCCAATGTGGCTGATCATCCTCCCAGACCAACTACGAATCATCGG 22883 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCT 205 |||| | ||| ||||| ||||||| ||||| ||| || ||| Sbjct 22882 CTTGTTAGGCCTTTACCCTTCCAACTACCTAATTCGATATAAGCT 22838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071889294560